CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES00273	Sorghum	cytosol	97.14	100.0
Zm00001d040257_P001	Maize	cytosol	97.33	97.33
Zm00001d008369_P001	Maize	cytosol, nucleus	96.19	96.19
Os03t0619400-01	Rice	plasma membrane	95.24	95.24
TraesCS4A01G054800.1	Wheat	cytosol, unclear	94.1	94.1
TraesCS4D01G250100.1	Wheat	cytosol	89.52	94.0
TraesCS5D01G347400.1	Wheat	cytosol	94.48	93.94
TraesCS5A01G342600.1	Wheat	cytosol	94.48	93.94
TraesCS4B01G250200.1	Wheat	cytosol	89.33	93.8
TraesCS5B01G341900.1	Wheat	cytosol	94.67	93.6
HORVU5Hr1G085530.1	Barley	mitochondrion	94.67	90.53
CDY71043	Canola	cytosol	53.52	89.21
GSMUA_Achr2P01800_001	Banana	cytosol	89.52	89.18
VIT_18s0001g00480.t01	Wine grape	cytosol	89.71	89.04
Bra020134.1-P	Field mustard	cytosol	85.33	88.36
HORVU4Hr1G068820.1	Barley	cytosol	94.1	88.21
KRH25193	Soybean	nucleus	88.38	88.05
KRH30467	Soybean	nucleus	88.0	87.67
Solyc11g069000.1.1	Tomato	extracellular	87.81	87.64
Bra002337.1-P	Field mustard	cytosol	87.43	87.1
CDX70950	Canola	cytosol	87.43	87.1
CDY16573	Canola	cytosol	87.43	87.1
CDX92428	Canola	cytosol	87.24	86.91
CDY09085	Canola	cytosol	87.24	86.91
AT5G20890.1	Thale cress	cytosol	87.05	86.72
CDY72106	Canola	cytosol	34.1	84.43
CDY72126	Canola	cytosol	33.9	83.96
GSMUA_Achr3P24440_001	Banana	peroxisome	84.76	80.91
Bra006584.1-P	Field mustard	cytosol	87.24	61.23
CDX88835	Canola	mitochondrion	87.24	60.26
PGSC0003DMT400019727	Potato	cytosol	15.62	58.99
EES05938	Sorghum	cytosol	36.0	34.68
EER88530	Sorghum	cytosol	34.67	34.02
EER97880	Sorghum	cytosol	34.48	33.83
EES04545	Sorghum	cytosol	36.0	33.75
EER95631	Sorghum	cytosol	32.76	32.15
EER97762	Sorghum	cytosol	29.9	29.35
EER92655	Sorghum	cytosol	29.14	27.42
EES09994	Sorghum	cytosol	26.67	25.55

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EntrezGene:8072400	UniProt:C5XFR5
InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	EnsemblPlants:EES00491	ProteinID:EES00491
ProteinID:EES00491.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005832
GO:GO:0006457	GO:GO:0006458	GO:GO:0008150	GO:GO:0009987	GO:GO:0044183	GO:GO:0051082
GO:GO:0061077	InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	EnsemblPlantsGene:SORBI_3003G112800	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	unigene:Sbi.9568
InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341	UniParc:UPI0001A84975	RefSeq:XP_002455371.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:10128239..10133680

Molecular Weight (calculated)

57453.8 Da

IEP (calculated)

5.713

GRAVY (calculated)

-0.122

Length

525 amino acids

Sequence
(BLAST)

001: MERVLKDDAV QEKGERARMA SFIGAMAIAD LIKTTLGPKG MDKILQSTGR GRNVTVTNDG ATILKSLHID NPAAKVLVDI SKVQDDEVGD GTTSVVVLAG
101: ELLKEAEKLV NMKIHPMTII AGYRMALECA RDTLLQKTMD NKENTDKFRT DLMNIAMTTL SSKILSQDKE YFAELAVDAV LRLKGSTNLE SIQILKKPGG
201: SLKDSFLDEG FILDKKIGIG QPKRIENAKI LVANTAMDTD KVKIYGARVR VDSMSKVADI EAAEKQKMRE KVQKIIGHGI NCFVNRQLIY NFPEELFADA
301: GILAIEHADF EGIERLALVT GGEIASTFDN PESVKLGHCK VIEEIMIGED RLIHFSGVAM GQACTIVLRG ASEHVLDEAE RSLHDALCVL SQTVNDTRVL
401: FGGGWPEMVM AKEVDELARK TPGKKSHAID AFSRALQAIP TIIADNAGLD SAELISQLRA EHHKENCTAG IDVITGSVGD MQKLGIQESF KVKQAILLSA
501: TEAAEMILRV DEIITCAPRR REDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.