Factsheet for Bra020134.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09085	Canola	cytosol	99.8	96.02
Bra002337.1-P	Field mustard	cytosol	98.62	94.88
AT5G20890.1	Thale cress	cytosol	95.27	91.65
CDY72106	Canola	cytosol	37.87	90.57
CDY72126	Canola	cytosol	37.67	90.09
TraesCS4D01G250100.1	Wheat	cytosol	86.78	88.0
TraesCS4B01G250200.1	Wheat	cytosol	86.78	88.0
PGSC0003DMT400050534	Potato	cytosol	54.83	87.97
VIT_18s0001g00480.t01	Wine grape	cytosol	91.32	87.52
Os05t0556700-01	Rice	cytosol, plasma membrane	56.41	87.2
GSMUA_Achr2P01800_001	Banana	cytosol	89.94	86.53
PGSC0003DMT400033155	Potato	cytosol	60.16	86.4
KRH25193	Soybean	nucleus	89.55	86.15
KRH30467	Soybean	nucleus	89.15	85.77
Os03t0619400-01	Rice	plasma membrane	88.76	85.71
Solyc11g069000.1.1	Tomato	extracellular	88.76	85.55
TraesCS4A01G054800.1	Wheat	cytosol, unclear	88.36	85.33
EES00491	Sorghum	cytosol	88.36	85.33
EES00273	Sorghum	cytosol	85.6	85.1
Zm00001d040257_P001	Maize	cytosol	87.77	84.76
TraesCS5A01G342600.1	Wheat	cytosol	87.97	84.47
TraesCS5D01G347400.1	Wheat	cytosol	87.97	84.47
Zm00001d008369_P001	Maize	cytosol, nucleus	86.78	83.81
TraesCS5B01G341900.1	Wheat	cytosol	87.77	83.8
HORVU5Hr1G085530.1	Barley	mitochondrion	87.77	81.06
HORVU4Hr1G068820.1	Barley	cytosol	87.97	79.64
GSMUA_Achr3P24440_001	Banana	peroxisome	84.22	77.64
Zm00001d040688_P001	Maize	cytosol	40.43	72.95
Bra006584.1-P	Field mustard	cytosol	98.03	66.44
TraesCS3B01G595300.1	Wheat	cytosol	17.55	65.93
Zm00001d052882_P001	Maize	plastid	39.65	39.65
Bra038682.1-P	Field mustard	cytosol	36.69	33.51
Bra001423.1-P	Field mustard	cytosol	36.69	33.21
Bra001773.1-P	Field mustard	cytosol	35.5	32.97
Bra034807.1-P	Field mustard	cytosol	34.52	32.96
Bra021300.1-P	Field mustard	cytosol	33.73	32.2
Bra035820.1-P	Field mustard	cytosol	34.91	31.83
Bra022292.1-P	Field mustard	cytosol, plastid	33.33	31.71
Bra032797.1-P	Field mustard	cytosol	32.74	31.03
Bra012506.1-P	Field mustard	cytosol	32.74	31.03
Bra010965.1-P	Field mustard	cytosol	32.35	30.65
Bra001174.1-P	Field mustard	cytosol	29.78	27.21
Bra040242.1-P	Field mustard	cytosol	29.59	27.03
Bra040591.1-P	Field mustard	cytosol	27.22	25.79
Bra006338.1-P	Field mustard	cytosol	23.08	25.77
Bra008652.1-P	Field mustard	cytosol	27.22	25.75
Bra031959.1-P	Field mustard	cytosol	26.43	24.63
Bra036422.1-P	Field mustard	cytosol	26.04	24.26
Bra001094.1-P	Field mustard	cytosol	26.04	24.09
Bra038252.1-P	Field mustard	cytosol	35.31	23.52
Bra035423.1-P	Field mustard	cytosol	10.26	23.21

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.2	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra020134	EnsemblPlants:Bra020134.1
EnsemblPlants:Bra020134.1-P	InterPro:Chap_CCT_beta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4DUE1
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF23	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02341
UniParc:UPI00025433CB	:	:	:	:	:

Description

AT5G20890 (E=1e-276) | chaperonin, putative

Coordinates

chrA02:-:5196430..5199184

Molecular Weight (calculated)

55028.8 Da

IEP (calculated)

6.050

GRAVY (calculated)

-0.048

Length

507 amino acids

Sequence
(BLAST)

001: MASFIGAMAI ADLVKSTLGP KGMDKILQST GRGHSVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL AGELLREAEK LVTSKIHPMT
101: IIAGYRMAAE CAREALLKRV MDNKENAEKF RSDLMKIAMT TLCSKILSQD KEHFAEMAVD AIFRLKGSTN LESIQIIKKP GGSLRDSFLD EGFILDKKIG
201: IGQPKRIENA KILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVNKILAH GINCFVNRQL IYNFPEELFA DAGVLAIEHA DFEGIERLGL
301: VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGV AMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDSR VLLGGGWPEM VMAKEVDELA
401: RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAKHHNEGCN AGIDVISGAV GDMEERGIYE AFKVKQAVLL SATEAAEMIL RVDEIITCAP
501: RRREDRM

Best Arabidopsis Sequence Match ( AT5G20890.1 )
(BLAST)

001: MPIDKIFKDD ASEEKGERAR MASFVGAMAI SDLVKSTLGP KGMDKILQST GRGHAVTVTN DGATILKSLH IDNPAAKVLV DISKVQDDEV GDGTTSVVVL
101: AGELLREAEK LVASKIHPMT IIAGYRMASE CARNALLKRV IDNKDNAEKF RSDLLKIAMT TLCSKILSQD KEHFAEMAVD AVFRLKGSTN LEAIQIIKKP
201: GGSLKDSFLD EGFILDKKIG IGQPKRIENA NILVANTAMD TDKVKIYGAR VRVDSMTKVA EIEGAEKEKM KDKVKKIIGH GINCFVNRQL IYNFPEELFA
301: DAGILAIEHA DFEGIERLGL VTGGEIASTF DNPESVKLGH CKLIEEIMIG EDKLIHFSGC EMGQACSIVL RGASHHVLDE AERSLHDALC VLSQTVNDTR
401: VLLGGGWPEM VMAKEVDELA RKTAGKKSHA IEAFSRALVA IPTTIADNAG LDSAELVAQL RAEHHTEGCN AGIDVITGAV GDMEERGIYE AFKVKQAVLL
501: SATEASEMIL RVDEIITCAP RRREDRM

Arabidopsis Description

CCT2T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.