Factsheet for Bra038682.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 2
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001094.1-P
Bra025713.1-P
Bra031959.1-P
Bra036422.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	Bra025713.1-P	AT1G19180.1	21798944
AT3G11830.1	Bra001094.1-P	AT3G03960.1	21798944
AT3G11830.1	Bra031959.1-P	AT3G03960.1	21798944
AT3G11830.1	Bra036422.1-P	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53919	Canola	cytosol	90.81	98.63
Bra034807.1-P	Field mustard	cytosol	93.69	97.93
AT3G11830.1	Thale cress	cytosol	98.02	97.67
CDY67306	Canola	cytosol	59.28	97.34
Bra001423.1-P	Field mustard	cytosol	98.02	97.14
Os06t0687700-01	Rice	plasma membrane	49.91	91.72
Solyc06g065520.2.1	Tomato	nucleus, plastid	91.53	91.04
PGSC0003DMT400067201	Potato	cytosol	91.35	90.86
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	91.17	90.36
GSMUA_Achr2P21510_001	Banana	cytosol	83.42	90.25
EES04545	Sorghum	cytosol	90.81	90.0
VIT_00s0670g00010.t01	Wine grape	cytosol	90.99	89.86
KRH73433	Soybean	endoplasmic reticulum, nucleus	90.27	89.46
Zm00001d053857_P002	Maize	cytosol	90.09	89.29
TraesCS6D01G121300.1	Wheat	cytosol	88.83	88.51
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	88.83	88.51
TraesCS6B01G159800.1	Wheat	cytosol	88.65	88.33
HORVU6Hr1G025270.1	Barley	cytosol	88.47	88.15
GSMUA_Achr8P16590_001	Banana	plastid	89.73	82.18
Bra020134.1-P	Field mustard	cytosol	33.51	36.69
Bra002337.1-P	Field mustard	cytosol	33.87	35.67
Bra001773.1-P	Field mustard	cytosol	33.33	33.88
Bra035820.1-P	Field mustard	cytosol	33.69	33.63
Bra021300.1-P	Field mustard	cytosol	30.45	31.83
Bra022292.1-P	Field mustard	cytosol, plastid	30.27	31.52
Bra001174.1-P	Field mustard	cytosol	31.17	31.17
Bra040242.1-P	Field mustard	cytosol	31.17	31.17
Bra010965.1-P	Field mustard	cytosol	29.01	30.09
Bra032797.1-P	Field mustard	cytosol	28.83	29.91
Bra012506.1-P	Field mustard	cytosol	28.83	29.91
Bra031959.1-P	Field mustard	cytosol	25.59	26.1
Bra001094.1-P	Field mustard	cytosol	25.59	25.91
Bra036422.1-P	Field mustard	cytosol	24.86	25.37
Bra006584.1-P	Field mustard	cytosol	34.05	25.27
Bra038252.1-P	Field mustard	cytosol	34.59	25.23
Bra035423.1-P	Field mustard	cytosol	10.09	25.0
Bra040591.1-P	Field mustard	cytosol	23.78	24.67
Bra008652.1-P	Field mustard	cytosol	23.78	24.63
Bra006338.1-P	Field mustard	cytosol	20.0	24.45

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	EnsemblPlantsGene:Bra038682	EnsemblPlants:Bra038682.1
EnsemblPlants:Bra038682.1-P	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1	InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0051082
InterPro:GROEL-like_equatorial_sf	InterPro:GroEL-like_apical_dom_sf	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413	UniProt:M4FC66
PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995	PANTHER:PTHR11353
PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf	TIGRFAMs:TIGR02345
UniParc:UPI0002545424	SEG:seg	:	:	:	:

Description

AT3G11830 (E=7e-284) | chaperonin, putative

Coordinates

chrA01:-:26635219..26639097

Molecular Weight (calculated)

59594.5 Da

IEP (calculated)

6.064

GRAVY (calculated)

-0.102

Length

555 amino acids

Sequence
(BLAST)

001: MIQPQIILLK EGTDTSQGKA QLLSNINSVT AVGDVVRTTL GPRGMDKLIH DDKGSVTISN DGATILKLLD IVHPAAKILV DIAKSQDSEV GDGTTTVVLL
101: AAEFLKEAKP FVEDGVHSQN LIRSYRTAST LAIEKVKELA VSIEGKSVEE KKGLLAKCAA TTLSSKLIGG EKEFFATMVV DAVMAIGDDD RLNLIGIKKV
201: PGGNMRDSFL VDGVAFKKTF SYAGFEQQPK KFLNPKILLL NIELELKSEK ENAEIRLSDP SQYQSIVDAE WNIIYDKLDK CVESGAKVVL SRLAIGDLAT
301: QYFADRDIFC AGRVAEEDLN RVAAAAGGTV QTSVNNIIPE VLGTCEIFEE KQVGGERFNI FSGCPSGRTA TIVLRGGADQ FIEEAERSLH DAIMIVRRAV
401: KNSTVVPGGG AIDMEISKYL RQHSRTIAGK SQLFINSYAK ALEVIPRQLC DNAGFDATDV LNKLRQKHAM QSGEGASYGV DINTGGIADS FANFVWEPAV
501: VKINAINAAT EAACLILSVD ETVKNPKSES AQGDAAAGAM GRGRGGGRGR GMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.