Factsheet for HORVU6Hr1G025270.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G031310.9
HORVU4Hr1G040660.1
HORVU5Hr1G062290.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11830.1	HORVU2Hr1G031310.9	AT1G19180.1	21798944
AT3G11830.1	HORVU5Hr1G062290.6	AT1G19180.1	21798944
AT3G11830.1	HORVU4Hr1G040660.1	AT3G03960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G131400.1	Wheat	cytosol, golgi, mitochondrion, unclear	98.56	98.56
TraesCS6D01G121300.1	Wheat	cytosol	98.03	98.03
TraesCS6B01G159800.1	Wheat	cytosol	97.67	97.67
EES04545	Sorghum	cytosol	94.61	94.11
Os06t0687700-01	Rice	plasma membrane	50.81	93.71
Zm00001d053857_P002	Maize	cytosol	93.9	93.39
Solyc06g065520.2.1	Tomato	nucleus, plastid	89.95	89.78
PGSC0003DMT400067201	Potato	cytosol	89.77	89.61
CDY01062	Canola	cytosol	80.79	89.29
CDY08491	Canola	cytosol	80.79	89.29
GSMUA_Achr2P21510_001	Banana	cytosol	82.23	89.28
AT3G11830.1	Thale cress	cytosol	89.23	89.23
VIT_00s0670g00010.t01	Wine grape	cytosol	89.59	88.79
CDX73850	Canola	cytosol	81.69	88.69
Bra038682.1-P	Field mustard	cytosol	88.15	88.47
CDY53919	Canola	cytosol	80.97	88.26
Bra034807.1-P	Field mustard	cytosol	83.66	87.76
Bra001423.1-P	Field mustard	cytosol	87.79	87.32
KRH14704	Soybean	cytosol, endoplasmic reticulum, nucleus	87.79	87.32
KRH73433	Soybean	endoplasmic reticulum, nucleus	87.61	87.14
CDY67306	Canola	cytosol	52.42	86.39
GSMUA_Achr8P16590_001	Banana	plastid	89.05	81.85
HORVU5Hr1G085530.1	Barley	mitochondrion	33.93	34.43
HORVU4Hr1G068820.1	Barley	cytosol	33.93	33.75
HORVU7Hr1G044070.2	Barley	cytosol	32.67	31.87
HORVU7Hr1G034140.1	Barley	plasma membrane	29.8	31.09
HORVU7Hr1G088080.1	Barley	cytosol	28.9	29.93
HORVU1Hr1G052730.26	Barley	cytosol	20.83	29.9
HORVU7Hr1G080310.1	Barley	cytosol	28.19	28.14
HORVU1Hr1G054530.14	Barley	cytosol	13.64	25.76
HORVU6Hr1G091690.4	Barley	cytosol, plastid	25.13	24.56
HORVU4Hr1G040660.1	Barley	cytosol	23.52	24.26

Protein Annotations

Gene3D:1.10.560.10	MapMan:20.3.1.7	Gene3D:3.30.260.10	Gene3D:3.50.7.10	InterPro:Chap_CCT_eta	InterPro:Chaperone_TCP-1
InterPro:Chaperonin_TCP-1_CS	InterPro:Cpn60/TCP-1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0006457	GO:GO:0008150	GO:GO:0009987	GO:GO:0046686	GO:GO:0051082	InterPro:GROEL-like_equatorial_sf
InterPro:GroEL-like_apical_dom_sf	EnsemblPlantsGene:HORVU6Hr1G025270	EnsemblPlants:HORVU6Hr1G025270.1	InterPro:IPR027409	InterPro:IPR027410	InterPro:IPR027413
UniProt:M0X0Z2	PFAM:PF00118	PRINTS:PR00304	ScanProsite:PS00750	ScanProsite:PS00751	ScanProsite:PS00995
PANTHER:PTHR11353	PANTHER:PTHR11353:SF22	SUPFAM:SSF48592	SUPFAM:SSF52029	SUPFAM:SSF54849	InterPro:TCP-1-like_intermed_sf
TIGRFAMs:TIGR02345	UniParc:UPI000294F591	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:91133064..91138442

Molecular Weight (calculated)

60128.1 Da

IEP (calculated)

6.151

GRAVY (calculated)

-0.134

Length

557 amino acids

Sequence
(BLAST)

001: MSSMMQPQII LLKEGTDTSQ GRAQVVSNIS ACTAVADTVR TTLGPRGMDK LIHDDKGTTI SNDGATIMRL LDIVHPAAKI LVDIAKSQDS EVGDGTTTVV
101: LLAAEFMKEA KPYVEDGVHP HSLIRSYRSA GNMAIERVRE LAVSIEGESL EEKKSLLAKC AATTLSSKLI SGEKEFFASM VVDAVLAIGH DDRLNLIGIK
201: KVPGGTMRDS FLVNGVAFKK TFSYAGFEQQ PKKFLNPKIL LLNIELELKS EKENAEIRLS DPMQYQSIVD AEWNIIYDKL DKCVQSGAKI VLSRLAIGDL
301: ATQYFADRDI FCAGRVTEED LQRLSSATGG TVQTSVNNVI DEVLGTCEVF EEKQVGNERF NIFSGCPSGQ TATIVLRGGA DQFIEEAERS LHDAIMIVRR
401: AVRNSTVVPG GGAIDMEISK YLRLHARNIA GKSQFFVNSF AKALEVIPRQ LCDNAGFDAT DVLNKLRQKH ATDGGANYGV DINTGGIADS FANFVWEPAV
501: VKINAINAAT EAACLILSVD ETVKNPKSES AQGDAAAMGG RGGGGMRGRG GRGMRRR

Best Arabidopsis Sequence Match ( AT3G11830.1 )
(BLAST)

001: MASMMQPQII LLKEGTDTSQ GKAQLVSNIN ACTAVGDVVR TTLGPRGMDK LIHDDKGSVT ISNDGATIMK LLDIVHPAAK ILVDIAKSQD SEVGDGTTTV
101: VLLAAEFLKE AKPFIEDGVH AQNLIRSYRT ASTLAIAKVK ELAVSIEGKS VEEKKGLLAK CAATTLSSKL IGGEKEFFAT MVVDAVMAIG NDDRLNLIGI
201: KKVPGGNMRD SFLVDGVAFK KTFSYAGFEQ QPKKFLNPKI LLLNIELELK SEKENAEIRL SDPSQYQSIV DAEWNIIYDK LDKCVESGAK VVLSRLAIGD
301: LATQYFADRD IFCAGRVAEE DLNRVAAAAG GTVQTSVNNI IDEVLGTCEI FEEKQVGGER FNIFSGCPSG RTATIVLRGG ADQFIEEAER SLHDAIMIVR
401: RAVKNSTVVP GGGAIDMEIS KYLRQHSRTI AGKSQLFINS YAKALEVIPR QLCDNAGFDA TDVLNKLRQK HAMQSGEGAS YGVDINTGGI ADSFANFVWE
501: PAVVKINAIN AATEAACLIL SVDETVKNPK SESAQGDAAG AMGRGRGGGR GRGMRRR

Arabidopsis Description

CCT7T-complex protein 1 subunit eta [Source:UniProtKB/Swiss-Prot;Acc:Q9SF16]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.