Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G211000.1 | Wheat | nucleus | 70.85 | 90.87 |
| TraesCS5D01G219300.2 | Wheat | nucleus | 70.51 | 90.43 |
| TraesCS5A01G212800.1 | Wheat | plastid | 85.76 | 85.47 |
| Os09t0439200-01 | Rice | plastid | 37.97 | 48.28 |
| EER98969 | Sorghum | cytosol | 34.92 | 46.61 |
| Zm00001d020614_P001 | Maize | cytosol, plastid | 32.88 | 44.5 |
| Zm00001d005813_P002 | Maize | cytosol, plastid | 30.85 | 40.09 |
| GSMUA_Achr10P... | Banana | cytosol | 17.63 | 32.1 |
| GSMUA_Achr3P10270_001 | Banana | cytosol | 24.41 | 31.86 |
| HORVU2Hr1G031310.9 | Barley | cytosol, mitochondrion, plastid | 25.76 | 31.8 |
| GSMUA_Achr3P05920_001 | Banana | nucleus | 25.76 | 30.28 |
| Solyc07g042170.2.1 | Tomato | cytosol | 21.36 | 29.17 |
| GSMUA_Achr6P31050_001 | Banana | cytosol | 21.02 | 29.11 |
| GSMUA_Achr9P14370_001 | Banana | cytosol | 26.1 | 29.06 |
| GSMUA_Achr5P05170_001 | Banana | cytosol, mitochondrion, nucleus | 23.73 | 29.05 |
| PGSC0003DMT400075155 | Potato | nucleus | 20.68 | 28.37 |
| GSMUA_Achr5P22110_001 | Banana | mitochondrion | 23.39 | 27.94 |
| Bra008172.1-P | Field mustard | nucleus | 22.37 | 27.5 |
| CDY46022 | Canola | nucleus | 22.03 | 27.08 |
| CDY37269 | Canola | nucleus | 21.69 | 26.67 |
| VIT_11s0016g00710.t01 | Wine grape | cytosol, plastid | 23.73 | 26.12 |
| CDX85865 | Canola | cytosol | 19.66 | 25.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.36 | 25.51 |
| Solyc12g009220.1.1 | Tomato | nucleus | 21.69 | 25.4 |
| CDY41023 | Canola | plastid | 21.69 | 25.2 |
| CDX73289 | Canola | cytosol | 15.93 | 25.0 |
| CDY45408 | Canola | cytosol | 20.68 | 24.9 |
| Bra015880.1-P | Field mustard | cytosol | 20.68 | 24.9 |
| Bra025713.1-P | Field mustard | plastid | 21.36 | 24.8 |
| GSMUA_Achr7P19850_001 | Banana | cytosol | 20.34 | 24.79 |
| Bra003778.1-P | Field mustard | cytosol | 18.64 | 24.77 |
| HORVU2Hr1G112360.1 | Barley | cytosol, mitochondrion, nucleus | 16.61 | 24.62 |
| AT1G19180.1 | Thale cress | cytosol | 21.02 | 24.51 |
| CDY26697 | Canola | plastid | 21.02 | 24.51 |
| AT1G74950.1 | Thale cress | cytosol | 20.68 | 24.5 |
| PGSC0003DMT400007592 | Potato | nucleus | 21.02 | 24.41 |
| Bra016520.1-P | Field mustard | plastid | 21.36 | 24.32 |
| CDX83781 | Canola | plastid | 21.69 | 24.24 |
| CDX73127 | Canola | cytosol | 20.0 | 24.08 |
| CDX96675 | Canola | plastid | 21.36 | 23.95 |
| CDX68156 | Canola | cytosol | 14.58 | 23.76 |
| Bra031065.1-P | Field mustard | plastid | 21.36 | 23.08 |
| CDX81917 | Canola | plastid | 21.02 | 12.2 |
| CDY21679 | Canola | plastid | 21.02 | 11.38 |
Protein Annotations
Description
No Description!
Coordinates
chrchr5H:-:484878712..484880525
Molecular Weight (calculated)
30375.2 Da
IEP (calculated)
9.202
GRAVY (calculated)
-0.293
Length
295 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGRARPAGS LSSHLAVYHE ELIHFKRTEA PGSQKSALEL FVGGRLASEG RSEEARCGGL LCMEGAGSGC KMGGGEGMSG RAGAGAAAAA KEKSGFAATC
101: SLLSRYMKEK KGGALQGLVG LDMAPPAAVV VGGGAFQPPT TMNLLSGLEE PNTAGVELAL EKSSVGQLLK APTDNQDARE DAHQLTIFYG GKVVVVDNFP
201: STKVNGLLQM ANGAGDAGDK AGSSSLVQRS PPQPAHNTLP DLPIARRNSL HRFLEKRKGR IVAKAPYQIS SSSAAPSKQA NGDNAWLGLG QEVTN
101: SLLSRYMKEK KGGALQGLVG LDMAPPAAVV VGGGAFQPPT TMNLLSGLEE PNTAGVELAL EKSSVGQLLK APTDNQDARE DAHQLTIFYG GKVVVVDNFP
201: STKVNGLLQM ANGAGDAGDK AGSSSLVQRS PPQPAHNTLP DLPIARRNSL HRFLEKRKGR IVAKAPYQIS SSSAAPSKQA NGDNAWLGLG QEVTN
001: MSSFSAECWD FSGRKPSFSQ TCTRLSRYLK EKGSFGDLSL GMTCKPDVNG GSRQPTMMNL FPCEASGMDS SAGQEDIKPK TMFPRQSSFS SSSSSGTKED
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
101: VQMIKETTKS VKPESQSAPL TIFYGGRVMV FDDFSAEKAK EVIDLANKGS AKSFTCFTAE VNNNHSAYSQ KEIASSPNPV CSPAKTAAQE PIQPNPASLA
201: CELPIARRAS LHRFLEKRKD RITSKAPYQI DGSAEASSKP TNPAWLSSR
Arabidopsis Description
TIFY10BTIFY10B [Source:UniProtKB/TrEMBL;Acc:A0A178WA69]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.