Factsheet for HORVU3Hr1G085210.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G073230.1
HORVU2Hr1G031310.9
HORVU2Hr1G074740.2
HORVU2Hr1G074780.1
HORVU2Hr1G075470.2
HORVU3Hr1G085210.2
HORVU3Hr1G098530.4
HORVU4Hr1G060950.3
HORVU4Hr1G070980.1
HORVU4Hr1G087520.3
HORVU5Hr1G060730.3
HORVU5Hr1G062290.6
HORVU6Hr1G038010.6
HORVU7Hr1G075150.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39940.1	HORVU2Hr1G031310.9	AT1G19180.1	17637677
AT2G39940.1	HORVU5Hr1G062290.6	AT1G19180.1	17637677
AT2G39940.1	HORVU2Hr1G031310.9	AT1G19180.1	18547396
AT2G39940.1	HORVU5Hr1G062290.6	AT1G19180.1	18547396
AT2G39940.1	HORVU2Hr1G031310.9	AT1G74950.1	18547396
AT2G39940.1	HORVU5Hr1G062290.6	AT1G74950.1	18547396
AT2G39940.1	HORVU1Hr1G073230.1	AT2G39940.1	12724535
AT2G39940.1	HORVU3Hr1G085210.2	AT2G39940.1	12724535
AT2G39940.1	HORVU4Hr1G060950.3	AT2G39940.1	12724535
AT2G39940.1	HORVU4Hr1G087520.3	AT3G17860.1	17637675
AT2G39940.1	HORVU5Hr1G060730.3	AT3G17860.1	17637675
AT2G39940.1	HORVU4Hr1G087520.3	AT3G17860.1	18547396
AT2G39940.1	HORVU5Hr1G060730.3	AT3G17860.1	18547396
AT2G39940.1	HORVU4Hr1G087520.3	AT3G17860.1	19309455
AT2G39940.1	HORVU5Hr1G060730.3	AT3G17860.1	19309455
AT2G39940.1	HORVU3Hr1G098530.4	AT4G02570.1	12172031
AT2G39940.1	HORVU3Hr1G098530.4	AT4G02570.1	12445118
AT2G39940.1	HORVU3Hr1G098530.4	AT4G02570.1	12724535
AT2G39940.1	HORVU2Hr1G074740.2	AT4G14110.1	12724535
AT2G39940.1	HORVU2Hr1G074780.1	AT4G14110.1	12724535
AT2G39940.1	HORVU2Hr1G075470.2	AT5G08590.1	12172031
AT2G39940.1	HORVU2Hr1G075470.2	AT5G08590.1	14749489
AT2G39940.1	HORVU7Hr1G075150.4	AT5G14250.1	12724535
AT2G39940.1	HORVU4Hr1G070980.1	AT5G42970.1	12724535
AT2G39940.1	HORVU6Hr1G038010.6	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G399200.1	Wheat	cytosol	96.97	96.97
TraesCS3D01G360400.2	Wheat	cytosol	96.97	96.81
TraesCS3A01G367500.1	Wheat	cytosol	90.57	96.59
Os01t0853400-01	Rice	cytosol	88.22	88.07
Zm00001d012338_P001	Maize	cytosol	84.34	84.06
Zm00001d042833_P001	Maize	cytosol	83.67	83.11
EES01769	Sorghum	cytosol	83.33	83.05
HORVU1Hr1G073230.1	Barley	cytosol	78.79	79.19
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	66.5	67.75
GSMUA_Achr5P28930_001	Banana	cytosol	63.64	67.5
GSMUA_Achr9P03690_001	Banana	cytosol	65.99	65.01
HORVU4Hr1G060950.3	Barley	cytosol	62.29	63.14
VIT_13s0019g03380.t01	Wine grape	cytosol	61.28	60.87
KRH31107	Soybean	cytosol	58.59	58.98
KRG97777	Soybean	cytosol	58.59	58.98
KRH14993	Soybean	cytosol	55.22	57.75
Solyc05g052620.2.1	Tomato	cytosol	58.25	57.38
KRH73146	Soybean	cytosol	56.4	57.36
CDY24941	Canola	cytosol	55.89	56.27
Bra000156.1-P	Field mustard	cytosol	55.72	56.1
AT2G39940.1	Thale cress	cytosol	55.56	55.74
GSMUA_Achr8P02350_001	Banana	cytosol	15.99	55.23
CDY20501	Canola	cytosol	55.05	54.32
CDX93223	Canola	cytosol	54.04	54.31
Bra005000.1-P	Field mustard	cytosol	54.88	54.06
CDX74819	Canola	cytosol	54.38	53.83
CDY07041	Canola	cytosol	53.37	53.55
CDX93225	Canola	cytosol	53.54	53.54
CDY07040	Canola	cytosol	53.87	52.72
Bra017045.1-P	Field mustard	cytosol	53.54	52.39
Bra017044.1-P	Field mustard	cytosol	53.2	52.32
CDY60996	Canola	endoplasmic reticulum, golgi	55.56	46.94
HORVU5Hr1G075620.2	Barley	cytosol	31.99	33.45
HORVU6Hr1G021040.2	Barley	extracellular	7.41	31.43
HORVU2Hr1G070800.1	Barley	cytosol	30.13	31.18
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	16.16	27.99
HORVU6Hr1G077570.1	Barley	mitochondrion	29.46	27.87
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	15.32	27.25
HORVU4Hr1G078120.4	Barley	cytosol, plastid	31.14	27.13
HORVU1Hr1G021550.4	Barley	cytosol	28.96	26.79

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.7.2.1.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	GO:GO:0002213	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009987	GO:GO:2000022	EnsemblPlantsGene:HORVU3Hr1G085210
EnsemblPlants:HORVU3Hr1G085210.2	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp
UniProt:M0ZAX8	PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF3	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000295B892	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:611543440..611547265

Molecular Weight (calculated)

66168.4 Da

IEP (calculated)

7.144

GRAVY (calculated)

-0.012

Length

594 amino acids

Sequence
(BLAST)

001: MGGEVPEPRR LSRALSFGVP DEALHLVMGY VEAPRDREAA SLVCRRWHRI DALTRKHVTV AFCYAADPAR LLARFPRLES LALKGRPRAA MYGLISDDWG
101: AYAAPWVARL AAPLECLKAL HLRRMTVADD DVAALIRSRG HMLQELKLDK CSGFSTDALR LVARSCRSLR TLFLEECVIT DEGGEWLHEL AVNNSVLVTL
201: NFYMTELKVA PADLELLAKN CKSLLSLKIS ECDLSDLIGF FEAASALQDF AGGAFNEVGE LTKYEKVKFP PRVCFLGLTF MGKNEMPVIF PFSASLKKLD
301: LQYTFLTTED HCQLISKCPN LFVLEVRNVI GDRGLEVVGD TCKKLRRLRI ERGDDDPGLQ EEQGGVSQLG LTAVAVGCRD LEYIAAYVSD ITNGALESIG
401: TFCKNLYDFR LVLLDRQKQV TDLPLDNGVR ALLRSCTKLR RFALYLRPGG LSDIGLDYIG QYSGNIQYML LGNVGESDQG LIRFAIGCTN LRKLELRSCC
501: FSEQALSLAV LHMPSLRYIW VQGYKASPAG LELLLMARPF WNIEFTPPSP GGLHRMTLDR EPCGERQAQV LAYYSLAGQR QDCPDWVTPL HPAA

Best Arabidopsis Sequence Match ( AT2G39940.1 )
(BLAST)

001: MEDPDIKRCK LSCVATVDDV IEQVMTYITD PKDRDSASLV CRRWFKIDSE TREHVTMALC YTATPDRLSR RFPNLRSLKL KGKPRAAMFN LIPENWGGYV
101: TPWVTEISNN LRQLKSVHFR RMIVSDLDLD RLAKARADDL ETLKLDKCSG FTTDGLLSIV THCRKIKTLL MEESSFSEKD GKWLHELAQH NTSLEVLNFY
201: MTEFAKISPK DLETIARNCR SLVSVKVGDF EILELVGFFK AAANLEEFCG GSLNEDIGMP EKYMNLVFPR KLCRLGLSYM GPNEMPILFP FAAQIRKLDL
301: LYALLETEDH CTLIQKCPNL EVLETRNVIG DRGLEVLAQY CKQLKRLRIE RGADEQGMED EEGLVSQRGL IALAQGCQEL EYMAVYVSDI TNESLESIGT
401: YLKNLCDFRL VLLDREERIT DLPLDNGVRS LLIGCKKLRR FAFYLRQGGL TDLGLSYIGQ YSPNVRWMLL GYVGESDEGL MEFSRGCPNL QKLEMRGCCF
501: SERAIAAAVT KLPSLRYLWV QGYRASMTGQ DLMQMARPYW NIELIPSRRV PEVNQQGEIR EMEHPAHILA YYSLAGQRTD CPTTVRVLKE PI

Arabidopsis Description

COI1Coronatine-insensitive protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04197]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.