Factsheet for HORVU5Hr1G075620.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G098530.4
HORVU5Hr1G014300.4
HORVU5Hr1G093580.2
HORVU5Hr1G094220.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	HORVU5Hr1G014300.4	AT3G23050.1	15992545
AT1G12820.1	HORVU5Hr1G093580.2	AT3G23050.1	15992545
AT1G12820.1	HORVU5Hr1G094220.1	AT3G23050.1	15992545
AT1G12820.1	HORVU3Hr1G098530.4	AT4G02570.1	15992545
AT3G26810.1	HORVU5Hr1G014300.4	AT3G23050.1	15992545
AT3G26810.1	HORVU5Hr1G093580.2	AT3G23050.1	15992545
AT3G26810.1	HORVU5Hr1G094220.1	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G021040.2	Barley	extracellular	23.42	95.0
TraesCS5A01G281100.1	Wheat	cytosol	92.43	92.27
TraesCS5D01G288000.1	Wheat	cytosol	91.9	91.74
TraesCS5B01G280100.1	Wheat	cytosol	91.55	90.91
Os11t0515500-01	Rice	cytosol	71.3	71.3
EES09791	Sorghum	cytosol	69.19	67.99
Zm00001d007357_P005	Maize	cytosol	68.31	67.71
GSMUA_AchrUn_...	Banana	cytosol	60.74	64.73
GSMUA_Achr6P08000_001	Banana	cytosol	60.39	64.35
GSMUA_Achr6P16510_001	Banana	cytosol	59.68	63.6
GSMUA_Achr10P...	Banana	cytosol	59.51	63.41
GSMUA_Achr9P01140_001	Banana	cytosol	58.8	62.66
VIT_14s0068g01330.t01	Wine grape	cytosol	61.44	61.01
HORVU2Hr1G070800.1	Barley	cytosol	60.92	60.28
KRG94665	Soybean	cytosol	60.04	59.62
KRH06858	Soybean	cytosol	59.68	59.27
GSMUA_Achr6P20580_001	Banana	cytosol	51.94	59.0
AT3G26810.1	Thale cress	cytosol	59.51	58.78
KRH70053	Soybean	cytosol	59.15	58.64
Bra032954.1-P	Field mustard	cytosol	58.98	58.26
CDY34211	Canola	cytosol	58.8	58.09
AT1G12820.1	Thale cress	cytosol	58.98	58.06
CDY28523	Canola	cytosol	58.45	57.74
Bra026953.1-P	Field mustard	cytosol	57.75	56.75
CDX71968	Canola	cytosol	57.75	56.75
KRH08397	Soybean	cytosol	57.22	56.72
CDY16034	Canola	cytosol	57.75	56.65
CDY26594	Canola	cytosol	57.39	56.4
CDY31282	Canola	cytosol	58.27	56.39
CDY21068	Canola	cytosol	58.45	56.27
Bra016754.1-P	Field mustard	cytosol	58.27	56.1
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	28.35	46.94
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	27.11	46.11
HORVU1Hr1G021550.4	Barley	cytosol	51.94	45.95
HORVU6Hr1G077570.1	Barley	mitochondrion	48.42	43.79
HORVU4Hr1G078120.4	Barley	cytosol, plastid	46.83	39.0
HORVU3Hr1G085210.2	Barley	cytosol	33.45	31.99
HORVU1Hr1G073230.1	Barley	cytosol	32.22	30.96
HORVU4Hr1G060950.3	Barley	cytosol	31.34	30.38

Protein Annotations

EnsemblPlants:HORVU5Hr1G075620.2	EnsemblPlantsGene:HORVU5Hr1G075620	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944
PANTHER:PTHR43944:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000296BF29	UniProt:M0WJ49
MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:547486271..547494224

Molecular Weight (calculated)

62073.0 Da

IEP (calculated)

7.884

GRAVY (calculated)

0.128

Length

568 amino acids

Sequence
(BLAST)

001: MPYFPDEVVE HILGFVSSHR DRNAASLVCH AWYRVEGLTR RSVFISNCYA VRPERVHARF PCLRSLTVKG RPCFADFNLV PAGWGATAEP WVDACARTCP
101: GLEELRLKRM VITDDCLNHL ARSFPNLRSL VLVSCEGFST DGLATIATNC RFLKELDLHG SQVEFRGPHW FSCFPKPSTS LESLNFACLD GTVSANALES
201: LVARSPNLKS LRLNRAVPAA VLANILTSAP KLVDLGTGLV AQNNNADALS LYNAIQQCSS LNSLSGFWDS PRWITPVIHY ICKNLTCLNL SYAPTFQTAD
301: LIGAIRHCQN LRHLWVLDHI GDAGLKVVAS CCLELQELRV FPANADVLAS TDVTEEGLVA VSSGCRKLSS VLYSCSRMTN SALITVAKNC SRITSFRLRI
401: CLHGSVDAVT GQPLDEGFGA IVRSCKGLRR LSMSGLLTDS VFLYIGMYAE RLETLSVAFA GDSDDGMIYV LNGCKNLRKL EMRNCPFGDT ALLAGMHRYE
501: AMRSLWMSSC DITLGGCRSL AATMPNLNVE VVSQVDGVSC DAKKVEKLYV YRTLAGPRGD APGFVSAL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.