Factsheet for GSMUA_Achr6P08000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	88.93	88.93
GSMUA_Achr6P16510_001	Banana	cytosol	86.12	86.12
GSMUA_Achr10P...	Banana	cytosol	86.12	86.12
GSMUA_Achr9P01140_001	Banana	cytosol	83.3	83.3
GSMUA_Achr6P20580_001	Banana	cytosol	72.61	77.4
HORVU6Hr1G021040.2	Barley	extracellular	18.01	68.57
Os04t0395600-01	Rice	cytosol	73.73	68.35
VIT_14s0068g01330.t01	Wine grape	cytosol	73.17	68.18
TraesCS2D01G285000.1	Wheat	cytosol	72.8	67.6
HORVU2Hr1G070800.1	Barley	cytosol	72.8	67.6
Zm00001d003911_P003	Maize	cytosol	72.8	67.48
TraesCS2A01G286200.1	Wheat	cytosol	72.61	67.42
TraesCS2B01G302900.1	Wheat	cytosol	72.42	67.25
KRG94665	Soybean	cytosol	71.11	66.26
KXG26136	Sorghum	cytosol	73.36	65.94
KRH06858	Soybean	cytosol	70.73	65.91
AT3G26810.1	Thale cress	cytosol	70.92	65.74
Zm00001d025268_P001	Maize	cytosol	70.54	65.62
Bra032954.1-P	Field mustard	cytosol	70.54	65.39
CDY28523	Canola	cytosol	70.54	65.39
CDY34211	Canola	cytosol	70.54	65.39
KRH70053	Soybean	cytosol	69.23	64.4
AT1G12820.1	Thale cress	cytosol	68.48	63.26
CDY31282	Canola	cytosol	68.67	62.35
Bra026953.1-P	Field mustard	cytosol	67.54	62.28
CDX71968	Canola	cytosol	67.54	62.28
CDY16034	Canola	cytosol	67.54	62.18
CDY26594	Canola	cytosol	66.98	61.76
GSMUA_Achr5P26930_001	Banana	cytosol	53.66	61.64
KRH08397	Soybean	cytosol	65.85	61.26
Bra016754.1-P	Field mustard	cytosol	67.73	61.19
CDY21068	Canola	cytosol	67.17	60.68
HORVU5Hr1G075620.2	Barley	cytosol	64.35	60.39
TraesCS5A01G281100.1	Wheat	cytosol	64.35	60.28
TraesCS5D01G288000.1	Wheat	cytosol	64.35	60.28
Os11t0515500-01	Rice	cytosol	63.98	60.04
TraesCS5B01G280100.1	Wheat	cytosol	64.35	59.97
GSMUA_Achr3P23850_001	Banana	cytosol	63.79	58.42
EES09791	Sorghum	cytosol	62.29	57.44
Zm00001d007357_P005	Maize	cytosol	60.98	56.72
GSMUA_Achr3P06710_001	Banana	cytosol	51.22	47.64
GSMUA_Achr5P05520_001	Banana	cytosol	51.41	46.68
GSMUA_Achr7P11780_001	Banana	cytosol	50.09	45.25
GSMUA_Achr5P28930_001	Banana	cytosol	30.02	28.57
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	30.77	28.13
GSMUA_Achr9P03690_001	Banana	cytosol	31.14	27.53
GSMUA_Achr8P02350_001	Banana	cytosol	8.63	26.74

Protein Annotations

EnsemblPlants:GSMUA_Achr6P08000_001	EnsemblPlants:GSMUA_Achr6T08000_001	EnsemblPlantsGene:GSMUA_Achr6G08000_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	PFAM:PF13516	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI000296C212	UniProt:M0T549	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_Achr6G08000_001]

Coordinates

chr6:-:5365694..5368658

Molecular Weight (calculated)

59138.3 Da

IEP (calculated)

5.493

GRAVY (calculated)

0.038

Length

533 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIVDFLGSHR DRNAVSTGKP HFADFNLVPY DWGGFAQPWI EAAARGCPGL EELRLKRMVV TDDDLELLAR SFPSFKSLVL VSCEGFSTDG
101: LAAIATYCRG LRELDLQENE VEDHGRQWLS CFPDSCTSLV SLNFACLKGE INTNALERLV ARCPDLRSLK LNRAISVESL NRILARAPHL VDLGTGSMMV
201: NHHTEAYHRL INAFLGCKSL RSLSGFWDAS SCCLQAVYPV CVNLTALNLS YAPAIQGDDL IKLICLCFKL QKLWVLDCIG DKGLAAVAST CKDLQELRVF
301: PSDIYGAGTT AVTEEGLVAI SSGCSKLNSL LYFCYQMTNT ALVTVAKNCP HFTRFRLCIL DPGKPDPVTD QPLDEGFGAI VRSCKNLRRL SLSGLLTDKV
401: FLYIGMHAEH LEMLSIAFAG DSDKGMVYVL NGCKNLRKLE IRDCPFGDDA LLKDVTKYET MRSLWMSSCD VTLGGCRALA AKMPSLNVEI INESDEADEF
501: QENLSDLHKV EKLYVYRTVA RGRTDAPDFV WIL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.