CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90896
EES04173
EES17334
OQU91311

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	EER90896	AT3G23050.1	15992545
AT1G12820.1	EES17334	AT3G23050.1	15992545
AT1G12820.1	OQU91311	AT3G23050.1	15992545
AT1G12820.1	EES04173	AT4G02570.1	15992545
AT3G26810.1	EER90896	AT3G23050.1	15992545
AT3G26810.1	EES17334	AT3G23050.1	15992545
AT3G26810.1	OQU91311	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007357_P005	Maize	cytosol	83.05	83.77
HORVU6Hr1G021040.2	Barley	extracellular	17.99	74.29
Os11t0515500-01	Rice	cytosol	69.38	70.6
TraesCS5A01G281100.1	Wheat	cytosol	69.38	70.47
TraesCS5D01G288000.1	Wheat	cytosol	68.86	69.95
TraesCS5B01G280100.1	Wheat	cytosol	69.2	69.93
HORVU5Hr1G075620.2	Barley	cytosol	67.99	69.19
GSMUA_AchrUn_...	Banana	cytosol	58.48	63.41
GSMUA_Achr6P08000_001	Banana	cytosol	57.44	62.29
VIT_14s0068g01330.t01	Wine grape	cytosol	60.9	61.54
GSMUA_Achr6P16510_001	Banana	cytosol	56.75	61.54
GSMUA_Achr10P...	Banana	cytosol	56.57	61.35
GSMUA_Achr9P01140_001	Banana	cytosol	56.06	60.79
AT3G26810.1	Thale cress	cytosol	59.17	59.48
KRG94665	Soybean	cytosol	58.82	59.44
AT1G12820.1	Thale cress	cytosol	59.17	59.27
Bra032954.1-P	Field mustard	cytosol	58.82	59.13
KRH06858	Soybean	cytosol	58.48	59.09
KXG26136	Sorghum	cytosol	60.55	59.02
CDY34211	Canola	cytosol	58.65	58.96
CDY31282	Canola	cytosol	59.69	58.77
Bra026953.1-P	Field mustard	cytosol	58.65	58.65
CDY28523	Canola	cytosol	58.3	58.61
CDY16034	Canola	cytosol	58.65	58.55
CDX71968	Canola	cytosol	58.48	58.48
CDY21068	Canola	cytosol	59.52	58.31
Bra016754.1-P	Field mustard	cytosol	59.52	58.31
CDY26594	Canola	cytosol	58.13	58.13
KRH70053	Soybean	cytosol	56.75	57.24
GSMUA_Achr6P20580_001	Banana	cytosol	48.96	56.6
KRH08397	Soybean	cytosol	55.88	56.37
KXG21312	Sorghum	plastid	52.77	51.61
EER92735	Sorghum	cytosol	44.12	42.36
EES05842	Sorghum	plastid	47.92	41.84
EES18318	Sorghum	cytosol	32.53	31.39
EES01769	Sorghum	cytosol	30.8	29.87
EER95129	Sorghum	cytosol	30.28	29.61

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:8083114	UniProt:C5Y2S5
EnsemblPlants:EES09791	ProteinID:EES09791	ProteinID:EES09791.1	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5
SMART:SM00367	EnsemblPlantsGene:SORBI_3005G126600	SUPFAM:SSF52047	SUPFAM:SSF81383	unigene:Sbi.3981	UniParc:UPI0001A86969
RefSeq:XP_002450803.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:55174999..55180981

Molecular Weight (calculated)

63609.3 Da

IEP (calculated)

7.095

GRAVY (calculated)

0.149

Length

578 amino acids

Sequence
(BLAST)

001: MAYFPEEVVE YILGYVTSHR DRNAASLVCR VWYDIERRGR RSVLVSNCYA VHPERVHMRF PNMRALSVKG KPHFADFNLV PAGWGASAEP WVDACARACP
101: GLEELRLKRM VVTDECLKLL SCSFTNFESL VLVCCEGFST AGLANIATNC RFLKELDLQE SCVKHQGHQW INCFPKPSTS LECLNFSCLT GEVNAVALEE
201: LVARSPNLKS LRLNPSVPID VLPRILSHTP MLEDLGTGSF VLGNNAGAYI SLYRALGKCT LLKSLSGFWD APGLYVRGML LPICRTRALT CLNLSYAPLI
301: QSDQLISIVR QCTRLHVLWV LDHIGDEGLK VLSYSCPDLQ ELRVYPSDPN AAARTSVTEE GLAAISFCRK LECVLFFCDR MTNTALITIA KYCPLLTSFR
401: LCILEPRSAD AVTGQPLDEG FGAIVQSCKG LRRFAMSGLL TDSVFLYIGM YAEKLEMLSV AFAGDTDDGM VYVLNGCKNL KKLEIRDSPF GDAALLAGAH
501: RYESMRSLWM SSCEITLGAC KTLAAAMPNI NVEVISEAGA SVGATDDGIS NARKVDKLYL YRTIAGPRSD TPGFVSIL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.