Factsheet for TraesCS5B01G280100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G457400.1
TraesCS3B01G497300.1
TraesCS3D01G450200.1
TraesCS5A01G058600.1
TraesCS5A01G378300.2
TraesCS5A01G382600.1
TraesCS5B01G058500.1
TraesCS5B01G381900.1
TraesCS5B01G386800.1
TraesCS5D01G069300.1
TraesCS5D01G388300.2
TraesCS5D01G392000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	TraesCS5A01G058600.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5A01G378300.2	AT3G23050.1	15992545
AT1G12820.1	TraesCS5A01G382600.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G058500.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G381900.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5B01G386800.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G069300.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G388300.2	AT3G23050.1	15992545
AT1G12820.1	TraesCS5D01G392000.1	AT3G23050.1	15992545
AT1G12820.1	TraesCS3A01G457400.1	AT4G02570.1	15992545
AT1G12820.1	TraesCS3B01G497300.1	AT4G02570.1	15992545
AT1G12820.1	TraesCS3D01G450200.1	AT4G02570.1	15992545
AT3G26810.1	TraesCS5A01G058600.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5A01G378300.2	AT3G23050.1	15992545
AT3G26810.1	TraesCS5A01G382600.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G058500.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G381900.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5B01G386800.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G069300.1	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G388300.2	AT3G23050.1	15992545
AT3G26810.1	TraesCS5D01G392000.1	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G288000.1	Wheat	cytosol	97.9	98.42
TraesCS5A01G281100.1	Wheat	cytosol	96.85	97.36
HORVU5Hr1G075620.2	Barley	cytosol	90.91	91.55
HORVU6Hr1G021040.2	Barley	extracellular	21.85	89.29
Os11t0515500-01	Rice	cytosol	71.33	71.83
EES09791	Sorghum	cytosol	69.93	69.2
Zm00001d007357_P005	Maize	cytosol	68.01	67.89
GSMUA_AchrUn_...	Banana	cytosol	60.31	64.73
GSMUA_Achr6P08000_001	Banana	cytosol	59.97	64.35
GSMUA_Achr6P16510_001	Banana	cytosol	59.09	63.41
GSMUA_Achr10P...	Banana	cytosol	58.92	63.23
GSMUA_Achr9P01140_001	Banana	cytosol	57.87	62.1
VIT_14s0068g01330.t01	Wine grape	cytosol	61.71	61.71
TraesCS2B01G302900.1	Wheat	cytosol	60.84	60.63
KRG94665	Soybean	cytosol	59.27	59.27
AT3G26810.1	Thale cress	cytosol	59.44	59.13
KRH06858	Soybean	cytosol	59.09	59.09
Bra032954.1-P	Field mustard	cytosol	59.09	58.78
AT1G12820.1	Thale cress	cytosol	59.27	58.75
CDY34211	Canola	cytosol	58.92	58.61
GSMUA_Achr6P20580_001	Banana	cytosol	51.22	58.6
KRH70053	Soybean	cytosol	58.39	58.29
CDY28523	Canola	cytosol	58.57	58.26
CDX71968	Canola	cytosol	58.22	57.61
Bra026953.1-P	Field mustard	cytosol	58.22	57.61
CDY16034	Canola	cytosol	58.22	57.51
CDY21068	Canola	cytosol	59.09	57.29
CDY26594	Canola	cytosol	57.87	57.27
CDY31282	Canola	cytosol	58.74	57.24
Bra016754.1-P	Field mustard	cytosol	58.92	57.12
KRH08397	Soybean	cytosol	55.77	55.67
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	52.8	51.27
TraesCS7B01G081200.1	Wheat	cytosol	47.38	43.36
TraesCS6B01G345800.1	Wheat	plastid	48.43	42.95
TraesCS3B01G399200.1	Wheat	cytosol	34.27	33.0
TraesCS1B01G288100.1	Wheat	cytosol	33.04	31.93
TraesCS4B01G213500.1	Wheat	cytosol	31.47	30.72

Protein Annotations

EnsemblPlants:TraesCS5B01G280100.1	EnsemblPlantsGene:TraesCS5B01G280100	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	ncoils:Coil
PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	MapMan:11.2.2.1.1
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:465994704..466000893

Molecular Weight (calculated)

62143.2 Da

IEP (calculated)

8.208

GRAVY (calculated)

0.127

Length

572 amino acids

Sequence
(BLAST)

001: MPYFPDEVVE HILGFVSSHR DRDAASLVCH AWYRIEGLTR RSVFISNCYA VRPERVHARF PCLRSLTVKG KPRFADFNLV PAGWGASAEP WVDACARACP
101: GLEELRLKRM VVTDGCLNHL AHSFPNLRSL VLVSCEGFST DGLATIATNC RFLKELDLQG SQVEFRGRHW LSCFPKPSTS LESLNFACLD GAVSANALES
201: LVARSPNLKS LRLNRAVPPA VLAKILTSAP KLVDLGTGLV AQSNNAGALP SLYSAIQQCT SLNSLSGFWD SSRWITPIIH CICKNLTCLN LSYAPMFRTV
301: DLIGTIHQCQ NLRHLWVLDH IGDAGLKVVA SSCLELQELR IFPANPANAN VLASTGVTEE GLVAVSSGCR KLNSVLYSCS RMTNSALITV AKNCSRITSF
401: RLHICLHGSV DAVTGQPLDE GFGAIVRSCK GLRRLSMSGL LTDSVFLYIG MYAERLETLS VSFAGDSDDG MIYVLNGCKN LRKLEIRNCP FGNTALLAGT
501: HRYEAMRSLW MSSCDITLGG CRSLAAAMPG LNVEVICQAD GGANDAKKVD KLYVYRTLAG PRDDAPGFVS AL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.