Factsheet for Bra026953.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001900.1-P
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P
Bra033886.1-P
Bra036257.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	Bra003735.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra008231.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra015801.1-P	AT1G75950.1	15992545
AT1G12820.1	Bra001900.1-P	AT3G23050.1	15992545
AT1G12820.1	Bra033886.1-P	AT3G23050.1	15992545
AT1G12820.1	Bra000874.1-P	AT4G02570.1	15992545
AT1G12820.1	Bra036257.1-P	AT4G02570.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26594	Canola	cytosol	98.96	98.96
Bra016754.1-P	Field mustard	cytosol	92.39	90.51
AT1G12820.1	Thale cress	cytosol	89.1	89.25
Bra032954.1-P	Field mustard	cytosol	82.87	83.3
VIT_14s0068g01330.t01	Wine grape	cytosol	74.05	74.83
KRG94665	Soybean	cytosol	73.36	74.13
KRH06858	Soybean	cytosol	72.84	73.6
KRH70053	Soybean	cytosol	71.11	71.73
GSMUA_Achr9P01140_001	Banana	cytosol	62.98	68.29
GSMUA_AchrUn_...	Banana	cytosol	62.8	68.11
GSMUA_Achr6P08000_001	Banana	cytosol	62.28	67.54
KRH08397	Soybean	cytosol	66.61	67.19
GSMUA_Achr6P16510_001	Banana	cytosol	61.76	66.98
GSMUA_Achr10P...	Banana	cytosol	61.42	66.6
Os04t0395600-01	Rice	cytosol	64.01	64.35
Zm00001d003911_P003	Maize	cytosol	63.67	64.0
TraesCS2A01G286200.1	Wheat	cytosol	63.49	63.94
TraesCS2D01G285000.1	Wheat	cytosol	63.49	63.94
HORVU2Hr1G070800.1	Barley	cytosol	63.49	63.94
TraesCS2B01G302900.1	Wheat	cytosol	63.32	63.76
GSMUA_Achr6P20580_001	Banana	cytosol	54.84	63.4
KXG26136	Sorghum	cytosol	64.36	62.73
Zm00001d025268_P001	Maize	cytosol	62.11	62.65
HORVU6Hr1G021040.2	Barley	extracellular	14.71	60.71
Os11t0515500-01	Rice	cytosol	57.79	58.8
EES09791	Sorghum	cytosol	58.65	58.65
TraesCS5A01G281100.1	Wheat	cytosol	57.44	58.35
TraesCS5B01G280100.1	Wheat	cytosol	57.61	58.22
TraesCS5D01G288000.1	Wheat	cytosol	57.27	58.17
HORVU5Hr1G075620.2	Barley	cytosol	56.75	57.75
Zm00001d007357_P005	Maize	cytosol	56.06	56.54
Bra003518.1-P	Field mustard	cytosol	57.79	56.23
Bra007720.1-P	Field mustard	cytosol	57.61	55.97
Bra000842.1-P	Field mustard	cytosol	56.23	55.46
Bra034191.1-P	Field mustard	cytosol	56.06	55.38
Bra014378.1-P	Field mustard	cytosol	52.94	48.88
Bra000604.1-P	Field mustard	cytosol, plastid	51.21	48.76
Bra013798.1-P	Field mustard	cytosol	48.79	46.46
Bra000156.1-P	Field mustard	cytosol	31.14	30.51
Bra005000.1-P	Field mustard	cytosol	31.66	30.35
Bra017045.1-P	Field mustard	cytosol	30.45	29.0
Bra017044.1-P	Field mustard	cytosol	30.28	28.97

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra026953	EnsemblPlants:Bra026953.1
EnsemblPlants:Bra026953.1-P	ncoils:Coil	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M4EDU3
PFAM:PF13516	PANTHER:PTHR43944	PANTHER:PTHR43944:SF9	SMART:SM00256	SUPFAM:SSF52047	UniParc:UPI0002542F88
SEG:seg	:	:	:	:	:

Description

AT1G12820 (E=2e-284) AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase

Coordinates

chrA09:+:34460854..34463145

Molecular Weight (calculated)

65172.8 Da

IEP (calculated)

6.759

GRAVY (calculated)

-0.118

Length

578 amino acids

Sequence
(BLAST)

001: MNYFPDEVIE HIFDFISSHK DRNSISLVSK SWHKIERCSR KRVFIGNCYA INPERLIQRF PSLRSLTLKG KPHFADFNLV PHEWGGFVHP WIVALAKARV
101: GLEELRLKRM VVSDESLELL SRSFSSFKSL VLVSCEGFTT DGLASVAANC RHLRELDLQE NEIDDHRGQW LNCFPESSTA LTSLNFSCLK GETNLAALER
201: LVARSPNLES LKVNRAVPLD ALTRLMSCAP QLVDLGVGSY ENEPDQESFM KLMAAIKKCT ELRSLSGFSE VAPLCLTAFY PICQNLTSLN LSYAAEIQGN
301: HLIRFIQFCK RLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLHDEE DNDTAVTEIG LVAISAGCPK LHSILYFCKQ MTNAALITVA KNCPNFIRFR
401: LCILEPNKPD HTTSQSLDEG FGAIVQACKG LRRLSVSGLL TDKVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVD
501: KYRTMRSLWM SSCEVTLGGC KRLARNAPWL NVEIINENEN NDVMERNEED EREKVDRLYL YRTVVGARKD APPCVTIL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.