Factsheet for Bra034191.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000874.1-P
Bra001900.1-P
Bra003735.1-P
Bra008231.1-P
Bra009867.1-P
Bra015801.1-P
Bra033886.1-P
Bra036257.1-P
Bra036557.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03190.1	Bra003735.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra008231.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra015801.1-P	AT1G75950.1	12008900
AT4G03190.1	Bra003735.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra008231.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra015801.1-P	AT1G75950.1	15992545
AT4G03190.1	Bra001900.1-P	AT3G23050.1	15992545
AT4G03190.1	Bra033886.1-P	AT3G23050.1	15992545
AT4G03190.1	Bra000874.1-P	AT4G02570.1	15992545
AT4G03190.1	Bra036257.1-P	AT4G02570.1	15992545
AT4G03190.1	Bra009867.1-P	AT5G25890.1	21734647
AT4G03190.1	Bra036557.1-P	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	100.0	91.55
Bra000842.1-P	Field mustard	cytosol	84.96	84.81
AT4G03190.1	Thale cress	cytosol, plastid	83.93	83.93
Bra007720.1-P	Field mustard	cytosol	68.55	67.39
Bra003518.1-P	Field mustard	cytosol	67.69	66.67
GSMUA_Achr5P26930_001	Banana	cytosol	49.23	62.07
GSMUA_Achr3P23850_001	Banana	cytosol	60.34	60.65
KXG21312	Sorghum	plastid	59.15	58.54
Os05t0150500-00	Rice	plastid	58.46	58.26
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	58.63	58.23
Zm00001d010863_P001	Maize	plastid	58.63	58.14
TraesCS1A01G091300.1	Wheat	cytosol	58.8	58.11
Bra032954.1-P	Field mustard	cytosol	57.09	58.09
Bra014378.1-P	Field mustard	cytosol	61.37	57.35
TraesCS1D01G099900.1	Wheat	cytosol	58.63	57.17
Bra026953.1-P	Field mustard	cytosol	55.38	56.06
Bra016754.1-P	Field mustard	cytosol	55.38	54.92
HORVU1Hr1G021550.4	Barley	cytosol	57.95	52.8
Bra000604.1-P	Field mustard	cytosol, plastid	47.86	46.13
Bra013798.1-P	Field mustard	cytosol	45.64	43.99
Bra000156.1-P	Field mustard	cytosol	29.74	29.49
Bra005000.1-P	Field mustard	cytosol	29.91	29.02
Bra017045.1-P	Field mustard	cytosol	29.23	28.17
Bra017044.1-P	Field mustard	cytosol	28.72	27.81

Protein Annotations

EnsemblPlants:Bra034191.1	EnsemblPlants:Bra034191.1-P	EnsemblPlantsGene:Bra034191	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	PFAM:PF00646	SMART:SM00256	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0002543BEB	UniProt:M4EZE8	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

AT4G03190 (E=7e-293) GRH1, ATGRH1, AFB1 | GRH1 (GRR1-LIKE PROTEIN 1); auxin binding / protein binding / ubiquitin-protein ligase

Coordinates

chrA01:+:27016916..27019663

Molecular Weight (calculated)

66381.7 Da

IEP (calculated)

7.897

GRAVY (calculated)

-0.117

Length

585 amino acids

Sequence
(BLAST)

001: MDRRFPFKVL EHIFSFVDSN EDRNSVSLVC KSWFETERRT RKRVFVGNCY AVSPLKVARR FPKMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAARR
101: PLLEEIRLKR MVVTDECLEK IAASFRDFKT LVLTSCEGFS TDGIAAIAST CRKLRDLELR ECIVDDLGGD WLSYFPETST SLVSLDFSCL DSEVKLSDLE
201: RLLSRSPNLK SLKLNRSVTL DVLESLLRRA PQLVELGTGS FSDELDPEEI AKLTKALSEL KQLKSLSGLW DLLPEYIPLL YSVCPRLTSL NLSYATVQMP
301: DLIDLLSRCS KLQKLWVMDL IEDKGLKTVA LCCKELRELR VFPSGADLDE TDVTLTEQGL VSVSEGCKKL ESVLYFCVQF TNAALVSIAK NRPNFRCFRL
401: CVMEPFAPDY RTQQPLDEGF KAIVEKCKDL RRLSVSGLLT DKAFEYIGVH AKKLRMLSIA FAGDSDLMLH HLLSGCQSLK KLEIRDCPFG DTALLENAAK
501: LETMRSLWMS SCFVSFGACK QLSQKMPRLN VEVIDEHPPK TRPDSSPVER IYIYRTVAGP RLDTPEFVWT IHKSPEVGVS RLSIR

Best Arabidopsis Sequence Match ( AT4G03190.1 )
(BLAST)

001: MGLRFPPKVL EHILSFIDSN EDRNSVSLVC KSWFETERKT RKRVFVGNCY AVSPAAVTRR FPEMRSLTLK GKPHFADYNL VPDGWGGYAW PWIEAMAAKS
101: SSLEEIRMKR MVVTDECLEK IAASFKDFKV LVLTSCEGFS TDGIAAIAAT CRNLRVLELR ECIVEDLGGD WLSYFPESST SLVSLDFSCL DSEVKISDLE
201: RLVSRSPNLK SLKLNPAVTL DGLVSLLRCA PQLTELGTGS FAAQLKPEAF SKLSEAFSNC KQLQSLSGLW DVLPEYLPAL YSVCPGLTSL NLSYATVRMP
301: DLVELLRRCS KLQKLWVMDL IEDKGLEAVA SYCKELRELR VFPSEPDLDA TNIPLTEQGL VFVSKGCRKL ESVLYFCVQF TNAALFTIAR KRPNLKCFRL
401: CVIEPFAPDY KTNEPLDKGF KAIAEGCRDL RRLSVSGLLS DKAFKYIGKH AKKVRMLSIA FAGDSDLMLH HLLSGCESLK KLEIRDCPFG DTALLEHAAK
501: LETMRSLWMS SCFVSFGACK LLSQKMPRLN VEVIDEHPPE SRPESSPVER IYIYRTVAGP RMDTPEFVWT IHKNPENGVS HLAIK

Arabidopsis Description

GRH1GRR1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR12]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.