Factsheet for Bra001900.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000842.1-P
Bra000874.1-P
Bra002479.1-P
Bra002729.1-P
Bra003518.1-P	nucleus
Bra003735.1-P
Bra007720.1-P	nucleus
Bra008231.1-P
Bra009867.1-P
Bra011082.1-P
Bra014303.1-P
Bra014378.1-P	nucleus
Bra015298.1-P
Bra015801.1-P
Bra016754.1-P
Bra018938.1-P
Bra024839.1-P
Bra024840.1-P
Bra026953.1-P
Bra030560.1-P
Bra032520.1-P
Bra032954.1-P
Bra034191.1-P
Bra035185.1-P
Bra036257.1-P
Bra036557.1-P
Bra040476.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G23050.1	Bra015298.1-P	AT1G04250.1	21734647
AT3G23050.1	Bra030560.1-P	AT1G04250.1	21734647
AT3G23050.1	Bra032520.1-P	AT1G04250.1	21734647
AT3G23050.1	Bra016754.1-P	AT1G12820.1	15992545
AT3G23050.1	Bra026953.1-P	AT1G12820.1	15992545
AT3G23050.1	Bra014303.1-P	AT1G51950.1	21734647
AT3G23050.1	Bra018938.1-P	AT1G51950.1	21734647
AT3G23050.1	Bra003735.1-P	AT1G75950.1	15208392
AT3G23050.1	Bra008231.1-P	AT1G75950.1	15208392
AT3G23050.1	Bra015801.1-P	AT1G75950.1	15208392
AT3G23050.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G23050.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G23050.1	Bra024840.1-P	AT2G01950.1	19000166
AT3G23050.1	Bra040476.1-P	AT2G46990.1	21734647
AT3G23050.1	Bra032954.1-P	AT3G26810.1	15992545
AT3G23050.1	Bra003518.1-P	AT3G62980.1	11713520
AT3G23050.1	Bra007720.1-P	AT3G62980.1	11713520
AT3G23050.1	Bra014378.1-P	AT3G62980.1	11713520
AT3G23050.1	Bra003518.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra007720.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra014378.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra003518.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra007720.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra014378.1-P	AT3G62980.1	22912871
AT3G23050.1	Bra000874.1-P	AT4G02570.1	11713520
AT3G23050.1	Bra036257.1-P	AT4G02570.1	11713520
AT3G23050.1	Bra000874.1-P	AT4G02570.1	12839993
AT3G23050.1	Bra036257.1-P	AT4G02570.1	12839993
AT3G23050.1	Bra000874.1-P	AT4G02570.1	15208392
AT3G23050.1	Bra036257.1-P	AT4G02570.1	15208392
AT3G23050.1	Bra000874.1-P	AT4G02570.1	18550827
AT3G23050.1	Bra036257.1-P	AT4G02570.1	18550827
AT3G23050.1	Bra000842.1-P	AT4G03190.1	15992545
AT3G23050.1	Bra034191.1-P	AT4G03190.1	15992545
AT3G23050.1	Bra011082.1-P	AT4G29080.1	21734647
AT3G23050.1	Bra009867.1-P	AT5G25890.1	21734647
AT3G23050.1	Bra036557.1-P	AT5G25890.1	21734647
AT3G23050.1	Bra009867.1-P	AT5G25890.1	21798944
AT3G23050.1	Bra036557.1-P	AT5G25890.1	21798944
AT3G23050.1	Bra002729.1-P	AT5G57420.1	21734647
AT3G23050.1	Bra002479.1-P	AT5G60450.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92973	Canola	cytosol, nucleus, plastid	100.0	100.0
AT3G23050.1	Thale cress	cytosol, nucleus, plastid	90.3	88.07
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	89.03	87.19
Bra039855.1-P	Field mustard	nucleus	75.95	77.25
KRH34377	Soybean	nucleus	75.53	74.9
VIT_05s0020g04690.t01	Wine grape	cytosol, nucleus, plastid	73.0	71.19
Solyc09g083290.2.1	Tomato	nucleus	68.78	69.07
PGSC0003DMT400015610	Potato	nucleus	68.35	68.07
Bra032520.1-P	Field mustard	nucleus	64.98	67.84
Bra015298.1-P	Field mustard	nucleus	62.45	66.07
Bra030560.1-P	Field mustard	nucleus	62.87	65.07
Bra040398.1-P	Field mustard	nucleus	62.87	64.5
Bra040122.1-P	Field mustard	nucleus	58.65	61.78
GSMUA_Achr10P...	Banana	nucleus	62.45	61.41
GSMUA_Achr8P20610_001	Banana	nucleus	62.03	60.25
GSMUA_Achr9P25550_001	Banana	nucleus	60.34	58.85
GSMUA_Achr9P10700_001	Banana	nucleus	58.65	57.68
GSMUA_Achr4P21020_001	Banana	nucleus	60.34	57.66
TraesCS5B01G058500.1	Wheat	nucleus	61.18	57.54
TraesCS5D01G069300.1	Wheat	nucleus	61.18	57.54
TraesCS5A01G058600.1	Wheat	nucleus	61.18	57.31
Os03t0742900-01	Rice	vacuole	54.85	55.08
TraesCS5D01G392000.1	Wheat	nucleus	53.16	54.31
TraesCS5B01G386800.1	Wheat	nucleus	53.16	53.85
KRG92429	Soybean	cytosol, nucleus, plastid	75.11	53.78
TraesCS5A01G382600.1	Wheat	nucleus	52.74	53.65
EER90896	Sorghum	nucleus	52.74	53.19
HORVU5Hr1G094220.1	Barley	nucleus	52.74	52.74
HORVU5Hr1G014300.4	Barley	nucleus	61.18	52.54
Zm00001d033976_P002	Maize	nucleus	52.32	52.32
GSMUA_Achr4P22520_001	Banana	nucleus	55.7	52.17
Os03t0633500-01	Rice	cytosol	51.05	51.93
Bra027504.1-P	Field mustard	nucleus	41.77	51.83
Zm00001d013302_P002	Maize	nucleus	49.79	51.75
Bra033890.1-P	Field mustard	nucleus	37.55	51.74
Bra023771.1-P	Field mustard	nucleus	37.13	51.46
Bra001899.1-P	Field mustard	nucleus	37.13	51.46
Bra032521.1-P	Field mustard	nucleus	38.82	51.11
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	54.43	50.99
EES17334	Sorghum	cytosol	60.34	50.89
Bra026755.1-P	Field mustard	nucleus	33.33	50.64
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	39.66	50.54
Os12t0601300-01	Rice	nucleus	58.65	50.18
Bra037824.1-P	Field mustard	plastid	40.51	49.23
Bra039732.1-P	Field mustard	nucleus	34.6	47.95
Bra001598.1-P	Field mustard	nucleus	38.82	47.42
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	52.32	46.97
Bra024406.1-P	Field mustard	nucleus	44.73	45.49
Bra027232.1-P	Field mustard	nucleus	37.13	45.36
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	37.13	44.67
HORVU5Hr1G093580.2	Barley	cytosol, nucleus, peroxisome	51.9	43.77
Bra030219.1-P	Field mustard	nucleus	46.41	41.35
Bra018993.1-P	Field mustard	nucleus	35.02	40.89
Bra011082.1-P	Field mustard	nucleus	49.37	40.34
TraesCS5D01G388300.2	Wheat	cytosol	52.74	39.68
Zm00001d041416_P001	Maize	nucleus	56.96	39.24
Bra031850.1-P	Field mustard	mitochondrion	47.68	38.7
TraesCS5A01G378300.2	Wheat	cytosol, mitochondrion, nucleus	49.79	38.69

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra001900	EnsemblPlants:Bra001900.1
EnsemblPlants:Bra001900.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4CCH0	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF89	SUPFAM:SSF54277	UniParc:UPI0002540740	SEG:seg	:

Description

AT3G23050 (E=2e-110) IAA7, AXR2 | IAA7 (INDOLE-3-ACETIC ACID 7); transcription factor

Coordinates

chrA03:+:19243301..19245148

Molecular Weight (calculated)

26157.6 Da

IEP (calculated)

8.569

GRAVY (calculated)

-0.504

Length

237 amino acids

Sequence
(BLAST)

001: MIGQLMNLNA TELCLGLPGG TKAVESPAKS SVRNKRGFSE TMDLMLNLQC NKEETVDLNN ATASKEKTLL KDPAKPPAKA QVVGWPPVRN YRKNMMTQQK
101: TSGEEEASSE KAGNGGGAAL VKVSMDGAPY LRKVDLTMYK SYQDLSDALA KMFSSFTMGN YGAQGMIDFM NESKLMNLLN SSEYVPSYED KDGDWMLVGD
201: VPWEMFVQSC KRLRIMKGSE AIGLAPRAME KYCKNRS

Best Arabidopsis Sequence Match ( AT3G23050.1 )
(BLAST)

001: MIGQLMNLKA TELCLGLPGG AEAVESPAKS AVGSKRGFSE TVDLMLNLQS NKEGSVDLKN VSAVPKEKTT LKDPSKPPAK AQVVGWPPVR NYRKNMMTQQ
101: KTSSGAEEAS SEKAGNFGGG AAGAGLVKVS MDGAPYLRKV DLKMYKSYQD LSDALAKMFS SFTMGNYGAQ GMIDFMNESK LMNLLNSSEY VPSYEDKDGD
201: WMLVGDVPWE MFVESCKRLR IMKGSEAVGL APRAMEKYCK NRS

Arabidopsis Description

IAA7Auxin-responsive protein IAA7 [Source:UniProtKB/Swiss-Prot;Acc:Q38825]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.