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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G51950.1 Bra015289.1-P AT1G04100.1 21734647
AT1G51950.1 Bra015298.1-P AT1G04250.1 21734647
AT1G51950.1 Bra030560.1-P AT1G04250.1 21734647
AT1G51950.1 Bra032520.1-P AT1G04250.1 21734647
AT1G51950.1 Bra016517.1-P AT1G19220.1 18505759
AT1G51950.1 Bra025720.1-P AT1G19220.1 18505759
AT1G51950.1 Bra016517.1-P AT1G19220.1 21734647
AT1G51950.1 Bra025720.1-P AT1G19220.1 21734647
AT1G51950.1 Bra012190.1-P AT1G19850.1 21734647
AT1G51950.1 Bra016492.1-P AT1G19850.1 21734647
AT1G51950.1 Bra025775.1-P AT1G19850.1 21734647
AT1G51950.1 Bra012190.1-P AT1G19850.1 22096563
AT1G51950.1 Bra016492.1-P AT1G19850.1 22096563
AT1G51950.1 Bra025775.1-P AT1G19850.1 22096563
AT1G51950.1 Bra035427.1-P AT1G59750.1 22096563
AT1G51950.1 Bra040476.1-P AT2G46990.1 21734647
AT1G51950.1 Bra020748.1-P AT3G06430.1 21798944
AT1G51950.1 Bra001670.1-P AT3G17600.1 21734647
AT1G51950.1 Bra021257.1-P AT3G17600.1 21734647
AT1G51950.1 Bra022224.1-P AT3G17600.1 21734647
AT1G51950.1 Bra022283.1-P AT3G18140.1 21798944
AT1G51950.1 Bra001900.1-P AT3G23050.1 21798944
AT1G51950.1 Bra033886.1-P AT3G23050.1 21798944
AT1G51950.1 Bra039732.1-P AT4G14560.1 21734647
AT1G51950.1 Bra039732.1-P AT4G14560.1 21798944
AT1G51950.1 Bra013748.1-P AT4G23980.1 21734647
AT1G51950.1 Bra019255.1-P AT4G23980.1 21734647
AT1G51950.1 Bra002327.1-P AT5G20730.1 18505759
AT1G51950.1 Bra020125.1-P AT5G20730.1 18505759
AT1G51950.1 Bra002327.1-P AT5G20730.1 21734647
AT1G51950.1 Bra020125.1-P AT5G20730.1 21734647
AT1G51950.1 Bra009867.1-P AT5G25890.1 21734647
AT1G51950.1 Bra036557.1-P AT5G25890.1 21734647
AT1G51950.1 Bra028110.1-P AT5G37020.1 21734647
AT1G51950.1 Bra002923.1-P AT5G55220.1 21798944
AT1G51950.1 Bra035563.1-P AT5G55220.1 21798944
AT1G51950.1 Bra002479.1-P AT5G60450.1 22096563
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY46538 Canola nucleus 99.26 99.26
CDY53439 Canola nucleus 97.04 95.97
Bra018938.1-P Field mustard nucleus 81.11 86.56
AT1G51950.1 Thale cress nucleus 81.48 82.4
Bra021184.1-P Field mustard nucleus 64.44 64.68
Bra001634.1-P Field mustard nucleus 61.48 61.03
Bra022164.1-P Field mustard nucleus 62.22 58.95
Bra009867.1-P Field mustard cytosol 32.59 50.0
Bra036557.1-P Field mustard nucleus 31.48 48.57
TraesCS1A01G122600.2 Wheat nucleus 37.78 45.33
TraesCS1D01G123500.1 Wheat nucleus 37.78 44.93
Solyc03g121060.2.1 Tomato nucleus 46.3 43.55
PGSC0003DMT400006709 Potato nucleus 45.56 43.46
Zm00001d010360_P001 Maize cytosol, nucleus 36.3 42.98
KRH09948 Soybean nucleus 50.74 42.81
TraesCS3B01G127400.1 Wheat nucleus 36.3 42.61
GSMUA_Achr3P16300_001 Banana endoplasmic reticulum, golgi, mitochondrion, plastid 35.56 42.11
Os01t0190300-01 Rice nucleus 37.04 42.02
EES17832 Sorghum nucleus 37.04 41.32
Zm00001d039513_P001 Maize cytosol, nucleus, plastid 34.81 41.05
HORVU1Hr1G028170.4 Barley cytosol, nucleus, plastid 37.41 40.89
TraesCS3D01G110200.1 Wheat nucleus 34.81 40.87
GSMUA_Achr5P09310_001 Banana endoplasmic reticulum 35.56 40.85
HORVU3Hr1G019750.4 Barley cytosol, nucleus, plastid 35.56 39.18
KRH23388 Soybean nucleus 50.0 39.02
Os02t0228900-01 Rice nucleus 43.33 39.0
Zm00001d037691_P003 Maize cytosol, nucleus 35.19 38.46
TraesCS3A01G108400.1 Wheat cytosol, nucleus, peroxisome 35.56 38.1
GSMUA_AchrUn_... Banana nucleus 42.59 37.34
OQU84670 Sorghum nucleus 40.0 36.99
Zm00001d016277_P002 Maize nucleus 40.74 36.79
KRH47203 Soybean nucleus 42.96 36.59
KRH44271 Soybean nucleus 41.85 36.1
GSMUA_Achr7P13680_001 Banana nucleus 48.15 35.42
TraesCS1B01G356600.1 Wheat cytosol 38.52 35.02
TraesCS1D01G345400.1 Wheat nucleus 38.15 34.92
Bra015326.1-P Field mustard nucleus 30.37 34.89
Bra021257.1-P Field mustard cytosol 9.26 34.72
Bra022934.1-P Field mustard nucleus 31.11 34.71
TraesCS1A01G343300.1 Wheat nucleus 37.78 34.69
Os05t0523300-01 Rice nucleus 41.48 34.25
Bra005508.1-P Field mustard nucleus 31.48 33.46
TraesCS3D01G276600.1 Wheat cytosol, mitochondrion, nucleus 40.74 32.84
Bra001670.1-P Field mustard nucleus 17.78 32.43
TraesCS3A01G276500.1 Wheat cytosol, mitochondrion, nucleus 40.37 31.96
Os01t0741900-01 Rice nucleus 39.63 31.94
VIT_09s0002g03410.t01 Wine grape nucleus 51.85 31.89
TraesCS3B01G310500.1 Wheat cytosol, mitochondrion, nucleus 40.37 31.78
Bra011045.1-P Field mustard nucleus 28.52 31.69
Zm00001d043515_P002 Maize cytosol, mitochondrion, nucleus 41.48 31.37
Bra022224.1-P Field mustard nucleus, plastid 18.15 31.01
KXG33336 Sorghum nucleus 41.85 30.96
HORVU3Hr1G070620.5 Barley cytosol, mitochondrion, nucleus 40.0 30.59
Zm00001d038784_P001 Maize nucleus 37.41 28.61
OQU86163 Sorghum golgi, plastid 37.78 28.49
KXG22376 Sorghum nucleus 36.3 28.41
Bra003484.1-P Field mustard nucleus, plastid 17.78 27.91
Bra032503.1-P Field mustard nucleus 31.85 27.74
Bra040476.1-P Field mustard cytosol, plastid 17.41 27.01
Bra007661.1-P Field mustard plastid 17.41 26.55
Bra015289.1-P Field mustard nucleus 25.93 25.83
Bra014411.1-P Field mustard nucleus, plastid 11.11 23.81
Bra024187.1-P Field mustard plastid 29.63 20.1
Bra023958.1-P Field mustard nucleus 17.78 19.75
Bra011332.1-P Field mustard nucleus 16.67 19.48
Protein Annotations
MapMan:11.2.2.1.2Gene3D:3.10.20.90InterPro:AUX/IAA_domInterPro:AUX_IAAEnsemblPlantsGene:Bra014303EnsemblPlants:Bra014303.1
EnsemblPlants:Bra014303.1-PGO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009734
GO:GO:0009987InterPro:IPR000270UniProt:M4DCT6InterPro:PB1_domPFAM:PF02309PFscan:PS51745
PANTHER:PTHR31734PANTHER:PTHR31734:SF2SUPFAM:SSF54277UniParc:UPI0002545DC4::
Description
AT1G51950 (E=1e-114) IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18); transcription factor
Coordinates
chrA08:-:1816291..1817699
Molecular Weight (calculated)
30019.5 Da
IEP (calculated)
9.626
GRAVY (calculated)
-0.821
Length
270 amino acids
Sequence
(BLAST)
001: MEGSSRNGEI SPKLLHLIPQ GRRNWFHHEK ASVYNTEEKN LELKLGPPGE DEDEDGSSLI RRIKKEPKDK SILSLAGNHH FSPSITTNKP TSQKRNAPGP
101: VVGWPPVRSF RKNLANGSSS KLGNESTSVL KNQKCDDDNG REKTKEPKRQ GGLFVKINMY GVPIGRKVDL SAHDSYEQLS LTVDKLFRGL LAAQRESLSF
201: GKEEKPITGL LDGNGEYTLT YEDNEGDKML VGDVPWHMFV SSVKRLRVIK TSEISSALTY ANGKQENMGS
Best Arabidopsis Sequence Match ( AT1G51950.1 )
(BLAST)
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.