Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G345400.1 | Wheat | nucleus | 91.84 | 91.53 |
| TraesCS1B01G356600.1 | Wheat | cytosol | 91.84 | 90.91 |
| Os05t0523300-01 | Rice | nucleus | 64.29 | 57.8 |
| KXG22376 | Sorghum | nucleus | 60.2 | 51.3 |
| TraesCS3A01G276500.1 | Wheat | cytosol, mitochondrion, nucleus | 53.4 | 46.04 |
| Zm00001d038784_P001 | Maize | nucleus | 54.42 | 45.33 |
| CDX87072 | Canola | cytosol | 25.51 | 42.86 |
| AT5G25890.1 | Thale cress | nucleus | 25.17 | 42.29 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 24.49 | 41.38 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 24.49 | 41.38 |
| TraesCS1A01G122600.2 | Wheat | nucleus | 31.63 | 41.33 |
| Bra009867.1-P | Field mustard | cytosol | 24.49 | 40.91 |
| TraesCS7A01G129000.1 | Wheat | nucleus | 11.22 | 40.24 |
| Bra036557.1-P | Field mustard | nucleus | 23.81 | 40.0 |
| CDX87863 | Canola | nucleus | 33.67 | 38.98 |
| Bra014303.1-P | Field mustard | nucleus | 34.69 | 37.78 |
| CDY46538 | Canola | nucleus | 34.69 | 37.78 |
| Solyc03g121060.2.1 | Tomato | nucleus | 36.39 | 37.28 |
| CDY22876 | Canola | nucleus | 31.97 | 37.15 |
| Bra018938.1-P | Field mustard | nucleus | 31.63 | 36.76 |
| AT1G51950.1 | Thale cress | nucleus | 33.33 | 36.7 |
| CDY53439 | Canola | nucleus | 34.01 | 36.63 |
| PGSC0003DMT400006709 | Potato | nucleus | 35.03 | 36.4 |
| CDY33844 | Canola | nucleus | 31.29 | 36.36 |
| AT3G16500.1 | Thale cress | nucleus | 32.99 | 36.06 |
| CDY19790 | Canola | cytosol | 23.81 | 35.9 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 41.84 | 35.65 |
| CDY43104 | Canola | nucleus | 32.31 | 35.58 |
| Bra021184.1-P | Field mustard | nucleus | 32.31 | 35.32 |
| CDY64626 | Canola | cytosol | 32.31 | 35.32 |
| CDY34957 | Canola | nucleus | 32.31 | 35.32 |
| KRH09948 | Soybean | nucleus | 38.1 | 35.0 |
| CDX82399 | Canola | nucleus | 32.31 | 34.93 |
| Bra001634.1-P | Field mustard | nucleus | 32.31 | 34.93 |
| TraesCS3A01G108400.1 | Wheat | cytosol, nucleus, peroxisome | 29.93 | 34.92 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.05 | 34.42 |
| GSMUA_Achr7P13680_001 | Banana | nucleus | 42.52 | 34.06 |
| CDX75884 | Canola | cytosol | 31.29 | 33.95 |
| KRH44271 | Soybean | nucleus | 36.05 | 33.87 |
| KRH47203 | Soybean | nucleus | 36.39 | 33.75 |
| CDX92077 | Canola | nucleus | 31.97 | 32.98 |
| Bra022164.1-P | Field mustard | nucleus | 31.97 | 32.98 |
| KRH23388 | Soybean | nucleus | 38.1 | 32.37 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 39.46 | 26.42 |
| TraesCS6A01G373300.1 | Wheat | cytosol, nucleus, plastid | 14.63 | 24.57 |
| TraesCS6A01G392600.3 | Wheat | cytosol, nucleus, plastid | 22.11 | 22.81 |
| TraesCS7A01G322000.1 | Wheat | nucleus | 20.75 | 22.59 |
| TraesCS4A01G204900.1 | Wheat | nucleus | 23.47 | 19.11 |
| TraesCS1A01G082700.2 | Wheat | plastid | 13.61 | 15.21 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF90 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1A01G343300 | EnsemblPlants:TraesCS1A01G343300.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1A:-:531877613..531879796
Molecular Weight (calculated)
32509.2 Da
IEP (calculated)
7.154
GRAVY (calculated)
-0.747
Length
294 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQGTPPRLL NLIPDDKGWQ AREAQAGHRG TRPPFDAEHE HEREEDKELD LKLGLPGVQH QGESCSAVSL ARFATHSCLT STTTGAKRGF FDAVGAKPQG
101: YDRRQQEDRE GRAPVHSSRD PPGRAAVVPV VGWPPVRSFR RNLTNGTSSK QQSPERQNVE ATDRAKPVCK KKPLIKINMD GIPIGRKVDL ASCDNYHKLS
201: SAVEELFRGF LEAQQDLSCD ESGVRGAEEK LFSGLLDGTG EYALVYEDDE GDRMLVGDIP WSVFVSTAKR LRVMRRSELP QRMTGANSTK VADC
101: YDRRQQEDRE GRAPVHSSRD PPGRAAVVPV VGWPPVRSFR RNLTNGTSSK QQSPERQNVE ATDRAKPVCK KKPLIKINMD GIPIGRKVDL ASCDNYHKLS
201: SAVEELFRGF LEAQQDLSCD ESGVRGAEEK LFSGLLDGTG EYALVYEDDE GDRMLVGDIP WSVFVSTAKR LRVMRRSELP QRMTGANSTK VADC
001: MEGYSRNGEI SPKLLDLMIP QERRNWFHDE KNSVFKTEEK KLELKLGPPG EEDDDESMIR HMKKEPKDKS ILSLAGKYFS PSSTKTTSHK RTAPGPVVGW
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
101: PPVRSFRKNL ASGSSSKLGN DSTTSNGVTL KNQKCDAAAK TTEPKRQGGM FVKINMYGVP IGRKVDLSAH NSYEQLSFTV DKLFRGLLAA QRDFPSSIED
201: EKPITGLLDG NGEYTLTYED NEGDKMLVGD VPWQMFVSSV KRLRVIKTSE ISSALTYGNG KQEKMRR
Arabidopsis Description
IAA18Auxin-responsive protein IAA18 [Source:UniProtKB/Swiss-Prot;Acc:O24408]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.