Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G122600.2 | Wheat | nucleus | 96.48 | 97.33 |
| HORVU1Hr1G028170.4 | Barley | cytosol, nucleus, plastid | 88.11 | 80.97 |
| Zm00001d010360_P001 | Maize | cytosol, nucleus | 59.91 | 59.65 |
| EES17832 | Sorghum | nucleus | 63.44 | 59.5 |
| TraesCS3D01G110200.1 | Wheat | nucleus | 56.39 | 55.65 |
| Zm00001d037691_P003 | Maize | cytosol, nucleus | 59.03 | 54.25 |
| TraesCS7D01G128200.1 | Wheat | cytosol, mitochondrion | 20.26 | 45.1 |
| AT5G25890.1 | Thale cress | nucleus | 33.48 | 43.43 |
| CDX87072 | Canola | cytosol | 33.48 | 43.43 |
| CDX88204 | Canola | cytosol, nucleus, peroxisome | 33.04 | 43.1 |
| CDX80545 | Canola | cytosol, nucleus, plastid | 33.04 | 43.1 |
| Bra009867.1-P | Field mustard | cytosol | 33.04 | 42.61 |
| Bra036557.1-P | Field mustard | nucleus | 32.16 | 41.71 |
| PGSC0003DMT400006709 | Potato | nucleus | 49.78 | 39.93 |
| Bra018938.1-P | Field mustard | nucleus | 44.49 | 39.92 |
| CDY22876 | Canola | nucleus | 44.49 | 39.92 |
| CDY33844 | Canola | nucleus | 44.05 | 39.53 |
| AT3G16500.1 | Thale cress | nucleus | 46.26 | 39.03 |
| CDX87863 | Canola | nucleus | 43.61 | 38.98 |
| Solyc03g121060.2.1 | Tomato | nucleus | 48.9 | 38.68 |
| CDX82399 | Canola | nucleus | 46.26 | 38.6 |
| Bra001634.1-P | Field mustard | nucleus | 46.26 | 38.6 |
| Bra021184.1-P | Field mustard | nucleus | 45.37 | 38.29 |
| CDY34957 | Canola | nucleus | 45.37 | 38.29 |
| CDY64626 | Canola | cytosol | 45.37 | 38.29 |
| AT1G51950.1 | Thale cress | nucleus | 44.93 | 38.2 |
| CDY43104 | Canola | nucleus | 44.93 | 38.2 |
| TraesCS7D01G127900.1 | Wheat | nucleus | 25.11 | 38.0 |
| Bra014303.1-P | Field mustard | nucleus | 44.93 | 37.78 |
| CDY19790 | Canola | cytosol | 32.16 | 37.44 |
| CDY46538 | Canola | nucleus | 44.49 | 37.41 |
| CDX75884 | Canola | cytosol | 44.49 | 37.27 |
| CDY53439 | Canola | nucleus | 44.05 | 36.63 |
| Bra022164.1-P | Field mustard | nucleus | 45.81 | 36.49 |
| CDX92077 | Canola | nucleus | 45.81 | 36.49 |
| KRH09948 | Soybean | nucleus | 50.66 | 35.94 |
| TraesCS7D01G128100.1 | Wheat | nucleus | 24.67 | 35.0 |
| KRH47203 | Soybean | nucleus | 48.02 | 34.38 |
| KRH44271 | Soybean | nucleus | 47.14 | 34.19 |
| TraesCS3D01G276600.1 | Wheat | cytosol, mitochondrion, nucleus | 48.9 | 33.13 |
| TraesCS7D01G127800.1 | Wheat | cytosol | 22.91 | 32.91 |
| KRH23388 | Soybean | nucleus | 49.34 | 32.37 |
| TraesCS1D01G345400.1 | Wheat | nucleus | 41.85 | 32.2 |
| VIT_04s0008g00220.t01 | Wine grape | nucleus | 48.02 | 31.59 |
| TraesCS6D01G357500.1 | Wheat | cytosol, mitochondrion, nucleus | 23.79 | 31.4 |
| VIT_09s0002g03410.t01 | Wine grape | nucleus | 51.1 | 26.42 |
| TraesCS6D01G378300.1 | Wheat | cytosol, nucleus, plastid | 30.4 | 24.38 |
| TraesCS7D01G318900.2 | Wheat | plastid | 29.07 | 20.31 |
| TraesCS1D01G084100.1 | Wheat | nucleus, plastid | 17.18 | 18.84 |
| TraesCS4D01G105700.1 | Wheat | cytosol | 30.4 | 18.35 |
Protein Annotations
| MapMan:11.2.2.1.2 | Gene3D:3.10.20.90 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF33 | SUPFAM:SSF54277 |
| EnsemblPlantsGene:TraesCS1D01G123500 | EnsemblPlants:TraesCS1D01G123500.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1D:+:125822567..125823933
Molecular Weight (calculated)
23833.1 Da
IEP (calculated)
9.131
GRAVY (calculated)
-0.493
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWKGSKDEE ERGLELSLGL PGYFSGSPGQ EGLEEKGGRR GAAGAGAKGR NNGSKPSRPA AAAPVVGWPP VRSFRRNLAS SSSKPPAAEP HHGAGGKADC
101: SIYKGRFVKI NMDGVPIGRK VDLKAHGSYG KLADAVDHLF QGLLAAQRDE SSCAAGEKHA AITGLLDGSG EYTLVYEDDE GDQMLVGDVP WDMFIATAKR
201: LRVLRSSDLN ASSLRAAVSR KRGAAEC
101: SIYKGRFVKI NMDGVPIGRK VDLKAHGSYG KLADAVDHLF QGLLAAQRDE SSCAAGEKHA AITGLLDGSG EYTLVYEDDE GDQMLVGDVP WDMFIATAKR
201: LRVLRSSDLN ASSLRAAVSR KRGAAEC
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
Arabidopsis Description
IAA26Auxin-responsive protein IAA26 [Source:UniProtKB/Swiss-Prot;Acc:Q8LAL2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.