Factsheet for TraesCS4D01G023600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G518600.1
TraesCS2B01G547000.1
TraesCS2D01G520000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	TraesCS2A01G518600.1	AT2G16370.1	21798944
AT3G18140.1	TraesCS2B01G547000.1	AT2G16370.1	21798944
AT3G18140.1	TraesCS2D01G520000.1	AT2G16370.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G026200.1	Wheat	cytosol	99.68	99.68
TraesCS4A01G288600.1	Wheat	cytosol	99.68	99.68
HORVU4Hr1G003940.2	Barley	cytosol	99.37	99.37
EES08772	Sorghum	cytosol	98.1	98.1
Zm00001d007577_P001	Maize	extracellular, mitochondrion	97.78	97.78
GSMUA_Achr10P...	Banana	cytosol	94.3	94.3
Os03t0681700-01	Rice	plasma membrane	93.99	93.99
KRH11050	Soybean	cytosol	91.14	91.14
KRH21226	Soybean	cytosol	90.82	90.82
Solyc03g059310.2.1	Tomato	cytosol	64.87	87.61
Bra022283.1-P	Field mustard	cytosol	65.82	85.25
VIT_06s0004g04740.t01	Wine grape	cytosol	85.13	85.13
CDX92201	Canola	cytosol	81.96	84.92
CDX95783	Canola	cytosol	81.65	84.59
AT3G18140.1	Thale cress	cytosol	81.65	84.59
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	87.66	78.25
AT2G22040.1	Thale cress	cytosol	68.04	68.69
CDY13785	Canola	cytosol	54.75	66.03
CDY13786	Canola	cytosol	53.8	64.39
CDX76957	Canola	cytosol	65.19	62.8
Bra031226.1-P	Field mustard	cytosol	64.87	61.93

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0031929	GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320
SUPFAM:SSF50998	EnsemblPlantsGene:TraesCS4D01G023600	EnsemblPlants:TraesCS4D01G023600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	TIGR:cd00200	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:10254979..10257683

Molecular Weight (calculated)

35287.5 Da

IEP (calculated)

6.633

GRAVY (calculated)

-0.260

Length

316 amino acids

Sequence
(BLAST)

001: MAQPSVILAT ASYDHTIRFW EAKSGRCYRT IQYPDSQVNR LEITPDKRFL AAAGNSHIRL FDVNSNSPQP VISYDSHTSN VMAVGFHCDG NWMYSGSEDG
101: TVRIWDLRTA TCQREYESRA AVNTVVLHPN QKELISGDQN GNIRVWDLAA NSCSCELVPE VDTAIRSLTV MWDGSMVVAA NNRGTCYVWR LLKGTQTITS
201: FEPLHKLQAH DGYILKCLLS PEFCDPNRYL ATASSDHTVK IWNVDGFKLE KTLIGHQRWV WDCVFSVDGA YLITASSDTT ARLWTMSTGE AIRVYQGHHK
301: ATVCCALHDG AESAPS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.