CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13785	Canola	cytosol	89.39	90.08
Bra031226.1-P	Field mustard	cytosol	89.02	71.0
CDX76957	Canola	cytosol	87.88	70.73
Solyc03g059310.2.1	Tomato	cytosol	56.06	63.25
CDX92201	Canola	cytosol	66.29	57.38
CDX95783	Canola	cytosol	66.29	57.38
TraesCS4D01G023600.1	Wheat	cytosol	64.39	53.8
TraesCS4B01G026200.1	Wheat	cytosol	64.39	53.8
TraesCS4A01G288600.1	Wheat	cytosol	64.39	53.8
Os03t0681700-01	Rice	plasma membrane	64.39	53.8
Zm00001d007577_P001	Maize	extracellular, mitochondrion	64.02	53.48
HORVU4Hr1G003940.2	Barley	cytosol	64.02	53.48
GSMUA_Achr10P...	Banana	cytosol	64.02	53.48
EES08772	Sorghum	cytosol	64.02	53.48
AT2G22040.1	Thale cress	cytosol	62.5	52.72
KRH21226	Soybean	cytosol	62.5	52.22
KRH11050	Soybean	cytosol	62.5	52.22
VIT_06s0004g04740.t01	Wine grape	cytosol	60.98	50.95

Protein Annotations

Gene3D:2.130.10.10	MapMan:27.7.1.3	UniProt:A0A078FKV4	EnsemblPlants:CDY13786	ProteinID:CDY13786	ProteinID:CDY13786.1
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0031929
GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	EnsemblPlantsGene:GSBRNA2T00078223001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:MLST8	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19842	PANTHER:PTHR19842:SF0	SMART:SM00320	SUPFAM:SSF50978	SignalP:SignalP-noTM
UniParc:UPI0004EF10D0	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

BnaA09g42880DBnaA09g42880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKV4]

Coordinates

chrLK032038:+:350525..352343

Molecular Weight (calculated)

29657.5 Da

IEP (calculated)

7.039

GRAVY (calculated)

-0.090

Length

264 amino acids

Sequence
(BLAST)

001: MKIFTLSKTF FLIASKRAAA CNPYIRLFDI NSHHGHVRTF VGHTSNVMAV GFHADGNSMY SGSEDGTVRI WDLRYNSAEI NAIVLHPNQI ELISGDQDGI
101: IRVWDTRMNS CTIELVPEPD TAIRSLSVMR DGTMLAAAND GGTCFIWNIL RESQVITKFE PIHKLQAHDR QILKCVLSPD SKYLATASSD KTVKIWNVDS
201: FTLDKVLTGH QRWVWDCAFS VDAKFILTAS SDMTARLWSM EEGNELRVYR GHNKAIVCCA LNDV

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.