CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05071
KRH24440
KRH29421
KRH51504
KRH52520
KRH60811
KRH61848

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G18140.1	KRH24440	AT2G16370.1	21798944
AT3G18140.1	KRH29421	AT2G16370.1	21798944
AT3G18140.1	KRH51504	AT2G16370.1	21798944
AT3G18140.1	KRH60811	AT2G16370.1	21798944
AT3G18140.1	KRH05071	AT4G32570.1	21798944
AT3G18140.1	KRH52520	AT4G32570.1	21798944
AT3G18140.1	KRH61848	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11050	Soybean	cytosol	99.37	99.37
Solyc03g059310.2.1	Tomato	cytosol	68.99	93.16
TraesCS4D01G023600.1	Wheat	cytosol	90.82	90.82
HORVU4Hr1G003940.2	Barley	cytosol	90.82	90.82
EES08772	Sorghum	cytosol	90.82	90.82
Zm00001d007577_P001	Maize	extracellular, mitochondrion	90.51	90.51
TraesCS4B01G026200.1	Wheat	cytosol	90.51	90.51
TraesCS4A01G288600.1	Wheat	cytosol	90.51	90.51
GSMUA_Achr10P...	Banana	cytosol	90.19	90.19
CDX92201	Canola	cytosol	85.13	88.2
AT3G18140.1	Thale cress	cytosol	85.13	88.2
CDX95783	Canola	cytosol	84.81	87.87
Bra022283.1-P	Field mustard	cytosol	66.77	86.48
Os03t0681700-01	Rice	plasma membrane	86.39	86.39
VIT_08s0007g08080.t01	Wine grape	cytosol, plastid	93.04	83.05
AT2G22040.1	Thale cress	cytosol	68.35	69.01
CDY13785	Canola	cytosol	53.16	64.12
CDY13786	Canola	cytosol	52.22	62.5
CDX76957	Canola	cytosol	64.24	61.89
Bra031226.1-P	Field mustard	cytosol	63.92	61.03

Protein Annotations

EntrezGene:100812024	Gene3D:2.130.10.10	MapMan:27.7.1.3	EMBL:ACUP02008350	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_13G227200
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0031929
GO:GO:0031931	GO:GO:0031932	GO:GO:0032008	GO:GO:0032956	UniProt:I1M1R3	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH21226	ProteinID:KRH21226	ProteinID:KRH21226.1	InterPro:MLST8
PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19842
PANTHER:PTHR19842:SF0	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000233AC60	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:33967115..33973238

Molecular Weight (calculated)

35316.5 Da

IEP (calculated)

6.381

GRAVY (calculated)

-0.287

Length

316 amino acids

Sequence
(BLAST)

001: MSQPTVILAT ASYDHTIRFW EAKSGRCYRT IQYPDSQVNR LEITPDKHFL AAAGNPHIRL FDVNSNSPQP VMSYDSHTNN VMAVGFQCDG NWMYSGSEDG
101: TVKIWDLRAP GCQREYESRA AVNTVVLHPN QTELISGDQN GNIRVWDLTA NSCSCELVPE VDTAVRSLTV MWDGSLVVAA NNHGTCYVWR LLRGTQTMTN
201: FEPLHKLQAH KGYILKCLLS PEFCEPHRYL ATASSDHTVK IWNVDGFTLE KTLIGHQRWV WDCVFSVDGA YLITASSDTT ARLWSMSTGE DIKVYQGHHK
301: ATICCALHDG AEPAAS

Best Arabidopsis Sequence Match ( AT3G18140.1 )
(BLAST)

001: MSQPSVILAT ASYDHTIRFW EAETGRCYRT IQYPDSHVNR LEITPDKHYL AAACNPHIRL FDVNSNSPQP VMTYDSHTNN VMAVGFQCDA KWMYSGSEDG
101: TVKIWDLRAP GCQKEYESVA AVNTVVLHPN QTELISGDQN GNIRVWDLRA NSCSCELVPE VDTAVRSLTV MWDGTMVVAA NNRGTCYVWR LLRGKQTMTE
201: FEPLHKLQAH NGHILKCLLS PANKYLATAS SDKTVKIWNV DGFKLEKVLT GHQRWVWDCV FSVDGEFLVT ASSDMTARLW SMPAGKEVKV YQGHHKATVC
301: CALHD

Arabidopsis Description

LST8-1 [Source:UniProtKB/TrEMBL;Acc:A0A178VME6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.