CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01133
KRH02371
KRH02451
KRH07289
KRH10215
KRH14510
KRH23112
KRH25249
KRH30413
KRH37687
KRH40128
KRH56450
KRH64800
KRH66280
KRH66282
KRH73621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32570.1	KRH14510	AT2G30880.1	21798944
AT4G32570.1	KRH73621	AT2G30880.1	21798944
AT4G32570.1	KRH25249	AT3G03000.1	21798944
AT4G32570.1	KRH30413	AT3G03000.1	21798944
AT4G32570.1	KRH02371	AT3G06430.1	21798944
AT4G32570.1	KRH02451	AT3G06430.1	21798944
AT4G32570.1	KRH37687	AT3G06430.1	21798944
AT4G32570.1	KRH01133	AT3G28715.1	21798944
AT4G32570.1	KRH40128	AT3G28715.1	21798944
AT4G32570.1	KRH56450	AT4G36690.1	21798944
AT4G32570.1	KRH64800	AT4G36690.1	21798944
AT4G32570.1	KRH07289	AT5G48385.1	21798944
AT4G32570.1	KRH66280	AT5G48385.1	21798944
AT4G32570.1	KRH66282	AT5G48385.1	21798944
AT4G32570.1	KRH10215	AT5G59210.1	21798944
AT4G32570.1	KRH23112	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52520	Soybean	cytosol, plastid	56.73	52.06
KRH61848	Soybean	cytosol, plastid	56.99	52.05
VIT_04s0008g04950.t01	Wine grape	plastid	48.28	41.5
Solyc06g065650.2.1	Tomato	nucleus	39.84	35.36
PGSC0003DMT400067114	Potato	nucleus	38.79	34.43
AT4G32570.1	Thale cress	nucleus	30.87	32.41
Bra011357.1-P	Field mustard	nucleus	27.97	30.81
CDX68863	Canola	nucleus	27.97	30.81
Bra040086.1-P	Field mustard	nucleus	29.02	30.81
CDY51673	Canola	nucleus	29.02	30.73
CDX75256	Canola	nucleus	27.97	30.72
CDY23332	Canola	nucleus	28.5	30.34
GSMUA_Achr2P08320_001	Banana	nucleus	22.69	27.48
GSMUA_AchrUn_...	Banana	cytosol	23.48	27.22
GSMUA_Achr6P01670_001	Banana	cytosol	25.33	26.45
CDY30950	Canola	nucleus	16.09	26.07
CDX83601	Canola	mitochondrion	16.89	21.92

Protein Annotations

MapMan:15.5.45	EMBL:ACUP02010663	EnsemblPlantsGene:GLYMA_17G205200	GO:GO:0003674	GO:GO:0003714	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611	GO:GO:0009719
GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	InterPro:IPR010399	UniProt:K7MMX1
EnsemblPlants:KRH05071	ProteinID:KRH05071	ProteinID:KRH05071.1	PFAM:PF06200	PANTHER:PTHR33077	PANTHER:PTHR33077:SF8
SMART:SM00979	InterPro:Tify_dom	UniParc:UPI000295926B	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:+:33329919..33335632

Molecular Weight (calculated)

40529.6 Da

IEP (calculated)

7.363

GRAVY (calculated)

-0.364

Length

379 amino acids

Sequence
(BLAST)

001: MAVLKMAQHN NANINNIVSQ QQQLVKPMFH DFLGIKNKNP IDSNVLYAPN LHVTSSSSSL SSTTVSRGGA TSDLASGLVG NKRNNSDSTF IGSSRDSFQM
101: VPDSLQNSHL IKMLRNAAGT DCLRCPNDDE VLLGMQSLKP ASGFQILQPP TGTKNDVNKW EQSILMNVGH SMQYLPHGGQ ILLFMDQITS SKMRDTNAGS
201: SFISQLAADE GSRTGIKGTG ILSSISTINA VTEKTSSILG GIRPKPVTNI DPESSTPLNR CGSASASCQI TIFYGGQTHV FDDADVIMGL DGSNGGSWST
301: TFSTESFVKL HHYNNARNGE NEIVIVSKIF SITSSSSHAI GPGDRLTTPT GAHQGSIVAK DTRNVIQQDN PNSEDKRAQ

Best Arabidopsis Sequence Match ( AT4G32570.1 )
(BLAST)

001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T

Arabidopsis Description

TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.