CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01133
KRH02371
KRH02451
KRH07289
KRH10215
KRH14510
KRH23112
KRH25249
KRH30413
KRH37687
KRH40128
KRH56450
KRH64800
KRH66280
KRH66282
KRH73621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32570.1	KRH14510	AT2G30880.1	21798944
AT4G32570.1	KRH73621	AT2G30880.1	21798944
AT4G32570.1	KRH25249	AT3G03000.1	21798944
AT4G32570.1	KRH30413	AT3G03000.1	21798944
AT4G32570.1	KRH02371	AT3G06430.1	21798944
AT4G32570.1	KRH02451	AT3G06430.1	21798944
AT4G32570.1	KRH37687	AT3G06430.1	21798944
AT4G32570.1	KRH01133	AT3G28715.1	21798944
AT4G32570.1	KRH40128	AT3G28715.1	21798944
AT4G32570.1	KRH56450	AT4G36690.1	21798944
AT4G32570.1	KRH64800	AT4G36690.1	21798944
AT4G32570.1	KRH07289	AT5G48385.1	21798944
AT4G32570.1	KRH66280	AT5G48385.1	21798944
AT4G32570.1	KRH66282	AT5G48385.1	21798944
AT4G32570.1	KRH10215	AT5G59210.1	21798944
AT4G32570.1	KRH23112	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52520	Soybean	cytosol, plastid	90.84	91.28
KRH05071	Soybean	nucleus	52.05	56.99
VIT_04s0008g04950.t01	Wine grape	plastid	56.14	52.83
PGSC0003DMT400067114	Potato	nucleus	46.75	45.43
Solyc06g065650.2.1	Tomato	nucleus	46.51	45.2
AT4G32570.1	Thale cress	nucleus	37.11	42.66
Bra040086.1-P	Field mustard	nucleus	35.18	40.9
CDY23332	Canola	nucleus	34.7	40.45
CDX68863	Canola	nucleus	33.49	40.41
CDX75256	Canola	nucleus	33.49	40.29
Bra011357.1-P	Field mustard	nucleus	33.25	40.12
CDY51673	Canola	nucleus	34.46	39.94
GSMUA_Achr6P01670_001	Banana	cytosol	28.19	32.23
GSMUA_AchrUn_...	Banana	cytosol	25.06	31.8
CDY30950	Canola	nucleus	17.59	31.2
GSMUA_Achr2P08320_001	Banana	nucleus	23.37	30.99
CDX83601	Canola	mitochondrion	15.42	21.92

Protein Annotations

EntrezGene:100819293	MapMan:15.5.45	EMBL:ACUP02002190	EnsemblPlantsGene:GLYMA_04G071400	GO:GO:0003674	GO:GO:0003714
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006950
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009611
GO:GO:0009719	GO:GO:0009987	GO:GO:0031347	GO:GO:1903507	GO:GO:2000022	UniProt:I1JUH9
InterPro:IPR010399	EnsemblPlants:KRH61848	ProteinID:KRH61848	ProteinID:KRH61848.1	PFAM:PF06200	PFscan:PS51320
PANTHER:PTHR33077	PANTHER:PTHR33077:SF8	SMART:SM00979	InterPro:Tify_dom	UniParc:UPI000233A95E	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:5938458..5944699

Molecular Weight (calculated)

43693.2 Da

IEP (calculated)

7.972

GRAVY (calculated)

-0.458

Length

415 amino acids

Sequence
(BLAST)

001: MAVLLRMAQP HNGNTNSTAN QQLVLHDFLG MKPAADSPQT ADVRFPEPSA SASSAGGRGP FSATSDIASE KQIGNHLEGV PFYGPRSDFS GTEISNRLVG
101: NKRSNSDSTF MGSSRDALQM VPDSFQNSHL MKVLRSAAEG ERSQRPNDDE VLLGMQSMKP SSSQIFQPPT STKIDANKWE RSILMNVGPS MQHPLRGAQL
201: APFVHQMASS KIRDSNAGPS FISQSAADEG SRTGIKGPGI LSSINAAATA TEKTIPSAVM LGGSRPKPGT NIIESSTPPS SQHGLTSACR QMTIFYGGQA
301: HVFDDVHPHK ADVIMALAGS NGGSWSTAFS PKSVVKMVSD GNLHGGENET GLVSNVAFPQ ELHGKLSITG SSSHAIGLGD RVTTPAGAHQ GSVFAKDTRT
401: LVQPPDPSSE DKRPQ

Best Arabidopsis Sequence Match ( AT4G32570.1 )
(BLAST)

001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T

Arabidopsis Description

TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.