Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P08320_001 | Banana | nucleus | 44.95 | 46.96 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 31.5 | 28.37 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 36.39 | 26.98 |
| PGSC0003DMT400067114 | Potato | nucleus | 34.86 | 26.7 |
| Solyc06g065650.2.1 | Tomato | nucleus | 34.25 | 26.23 |
| KRH61848 | Soybean | cytosol, plastid | 31.8 | 25.06 |
| KRH52520 | Soybean | cytosol, plastid | 31.5 | 24.94 |
| KRH05071 | Soybean | nucleus | 27.22 | 23.48 |
| CDY23332 | Canola | nucleus | 23.85 | 21.91 |
| Bra040086.1-P | Field mustard | nucleus | 23.85 | 21.85 |
| CDY51673 | Canola | nucleus | 23.55 | 21.51 |
| AT4G32570.1 | Thale cress | nucleus | 23.24 | 21.05 |
| CDX68863 | Canola | nucleus | 21.71 | 20.64 |
| Bra011357.1-P | Field mustard | nucleus | 21.71 | 20.64 |
| CDX75256 | Canola | nucleus | 21.71 | 20.58 |
| CDY30950 | Canola | nucleus | 11.31 | 15.81 |
| CDX83601 | Canola | mitochondrion | 9.17 | 10.27 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP02010_001 | EnsemblPlants:GSMUA_AchrUn_randomT02010_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG02010_001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 |
| PANTHER:PTHR33077:SF8 | PFAM:PF06200 | PFscan:PS51320 | SEG:seg | SMART:SM00979 | UniParc:UPI000296AD9B |
| UniProt:M0U5L3 | MapMan:15.5.45 | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG02010_001]
Coordinates
chrchrUn_random:+:8924380..8926325
Molecular Weight (calculated)
34918.3 Da
IEP (calculated)
9.767
GRAVY (calculated)
-0.377
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MNILAHVVIG IFGDFNFSTN IYMLIERQGV KGSEVFHFHG RKSAVPGPDV GNTLSGRKRS SSESIHSGSI NRVHPVCSDS LESSCLVKMF GKEVVSEHLG
101: KSHDDKIMLS MLRPPRPTSL ILHPLSSRSD SPTFKEEQSL SKNSGQISNH APRFSQAGMY LDDGSQTAIG GSGVMSTDNP INMAFGRNST GFLNKPKSSL
201: AIESEPSNIV RRSTTSSAGR QMTIFYAGQA HVFDNVQPNK ADVIMALARI NGGSWSTSHT SKSSERTTMN EAKVPVHGDM GHGISQLAGI PLASVLSGVT
301: SGGGTIGRDG RSMTQATEPT MGDRRDA
101: KSHDDKIMLS MLRPPRPTSL ILHPLSSRSD SPTFKEEQSL SKNSGQISNH APRFSQAGMY LDDGSQTAIG GSGVMSTDNP INMAFGRNST GFLNKPKSSL
201: AIESEPSNIV RRSTTSSAGR QMTIFYAGQA HVFDNVQPNK ADVIMALARI NGGSWSTSHT SKSSERTTMN EAKVPVHGDM GHGISQLAGI PLASVLSGVT
301: SGGGTIGRDG RSMTQATEPT MGDRRDA
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGDFFLKKT RFQQKFWLAS YKY
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.