Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75256 | Canola | nucleus | 93.31 | 93.04 |
| CDY23332 | Canola | nucleus | 74.13 | 71.63 |
| CDY51673 | Canola | nucleus | 74.13 | 71.23 |
| AT4G32570.1 | Thale cress | nucleus | 74.71 | 71.19 |
| CDY30950 | Canola | nucleus | 33.43 | 49.15 |
| CDX83601 | Canola | mitochondrion | 28.49 | 33.56 |
| KRH61848 | Soybean | cytosol, plastid | 40.41 | 33.49 |
| KRH52520 | Soybean | cytosol, plastid | 38.95 | 32.45 |
| VIT_04s0008g04950.t01 | Wine grape | plastid | 39.83 | 31.07 |
| Solyc06g065650.2.1 | Tomato | nucleus | 36.34 | 29.27 |
| PGSC0003DMT400067114 | Potato | nucleus | 35.47 | 28.57 |
| KRH05071 | Soybean | nucleus | 30.81 | 27.97 |
| GSMUA_Achr6P01670_001 | Banana | cytosol | 26.74 | 25.34 |
| GSMUA_Achr2P08320_001 | Banana | nucleus | 20.64 | 22.68 |
| GSMUA_AchrUn_... | Banana | cytosol | 20.64 | 21.71 |
Protein Annotations
| EnsemblPlants:CDX68863 | EnsemblPlantsGene:GSBRNA2T00130588001 | InterPro:IPR010399 | InterPro:Tify_dom | PANTHER:PTHR33077 | PANTHER:PTHR33077:SF8 |
| PFAM:PF06200 | PFscan:PS51320 | ProteinID:CDX68863 | ProteinID:CDX68863.1 | SEG:seg | SMART:SM00979 |
| UniParc:UPI0004EE1930 | MapMan:15.5.45 | : | : | : | : |
Description
BnaC01g05900D
Coordinates
chrLK031789:-:1628413..1630741
Molecular Weight (calculated)
37255.1 Da
IEP (calculated)
10.020
GRAVY (calculated)
-0.857
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MTNRNNNDDV DSRLREKEQQ DKLLFHDFLG SKTATLASTS MLPLDKAAKP ATASASSAGG RGGLSSTSDL GSGVGSHLDG IQLFGQRREA SGSIMSNRFS
101: GNKRSNSDSH ITTQEQHPEA LHWSKLLRTG PGSHSVNVAN QPPRGGGQIS HLLHQLSSSR FKDDVVAQTA ADEGSRTGKK GPRIMSSYTM PNPSKAECYT
201: PSSTANRKDL TSSTKQMTIF YGGQAHVFDD VHPNKADVIM ALAGSSGGSW STNLSHKLKT KNYTSDGPYK QGQVYEGGGS SRETPFLSPD IRARPVHQDT
301: TSSACHRIFT QPGREHQGSI ISRRRDTRDP VHISDPEKKP HDYV
101: GNKRSNSDSH ITTQEQHPEA LHWSKLLRTG PGSHSVNVAN QPPRGGGQIS HLLHQLSSSR FKDDVVAQTA ADEGSRTGKK GPRIMSSYTM PNPSKAECYT
201: PSSTANRKDL TSSTKQMTIF YGGQAHVFDD VHPNKADVIM ALAGSSGGSW STNLSHKLKT KNYTSDGPYK QGQVYEGGGS SRETPFLSPD IRARPVHQDT
301: TSSACHRIFT QPGREHQGSI ISRRRDTRDP VHISDPEKKP HDYV
001: MMVNHNNGQR PTDIDSRLRQ TEQDKLLFHD FLGSKNPTLA STSMADHRLP PDNKAAKAAM TPSTASASSA GGLGGLSSTS DLVERHSGGG NHLDGIQLFG
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
101: PRSDVSGSIM SNRFSGNKRS NSDSHFTTQE HPETLHWSKL LRNGPGSFSM NVNPLANQPP RGGGQISHLL HQLSTSRFKD ENVGPSVIAQ TAADEGSRTG
201: MKGPGILSSF TMPNSSKLES FAPSNTGNRK DLASSTKQMT IFYGGQAHVF DDVHPNKADV IMALAGSSGG SWSTGLSHKP KSKNNTSDGP YKLGQMYEGG
301: SSKETPQMPP EFRARPSHQP TSSACHRIFT QPGREHQGSI ISRGRDIRDP VHRSDPEKEA T
Arabidopsis Description
TIFY8Protein TIFY 8 [Source:UniProtKB/Swiss-Prot;Acc:Q84MB2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.