CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81722
CDX90032
CDX96836
CDX97535
CDY15177
CDY33258
CDY34252
CDY36574
CDY38318
CDY39087
CDY46317
CDY53304
CDY65326
CDY66415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	CDX90032	AT1G01440.1	21798944
AT5G48385.1	CDY15177	AT1G01440.1	21798944
AT5G48385.1	CDX81722	AT1G15570.1	21798944
AT5G48385.1	CDX96836	AT1G15570.1	21798944
AT5G48385.1	CDY36574	AT1G15570.1	21798944
AT5G48385.1	CDY53304	AT1G15570.1	21798944
AT5G48385.1	CDY66415	AT1G15570.1	21798944
AT5G48385.1	CDX97535	AT3G13990.1	21798944
AT5G48385.1	CDY33258	AT3G13990.1	21798944
AT5G48385.1	CDY39087	AT3G13990.1	21798944
AT5G48385.1	CDY65326	AT3G13990.1	21798944
AT5G48385.1	CDY34252	AT3G22440.1	21798944
AT5G48385.1	CDY38318	AT3G22440.1	21798944
AT5G48385.1	CDY46317	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020704.1-P	Field mustard	cytosol	95.36	94.99
CDY48750	Canola	cytosol	95.16	93.36
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	35.4	85.92
CDY00066	Canola	cytosol	84.14	81.46
AT5G48385.1	Thale cress	cytosol	85.3	79.03
KRH66282	Soybean	cytosol	64.6	61.17
KRH07289	Soybean	cytosol	64.02	60.62
KRH66280	Soybean	cytosol	63.44	60.29
PGSC0003DMT400071153	Potato	nucleus	61.9	58.72
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	63.64	58.44
PGSC0003DMT400053214	Potato	cytosol	61.51	58.24
Solyc06g082930.2.1	Tomato	nucleus	60.15	58.13
Solyc06g007640.2.1	Tomato	nucleus	60.15	58.02
GSMUA_Achr2P05710_001	Banana	nucleus	20.31	54.12
GSMUA_Achr8P29000_001	Banana	nucleus	55.13	52.78
TraesCS5A01G168100.1	Wheat	cytosol	53.97	51.76
HORVU5Hr1G051330.1	Barley	cytosol	53.77	51.58
GSMUA_Achr9P08130_001	Banana	cytosol	53.77	51.48
TraesCS5D01G172300.2	Wheat	cytosol	54.35	50.72
EES02294	Sorghum	nucleus	52.22	50.37
Zm00001d019890_P001	Maize	nucleus	51.84	50.19
TraesCS5B01G164900.2	Wheat	cytosol	53.77	50.18
Zm00001d019892_P001	Maize	nucleus	39.27	50.12
Zm00001d005107_P001	Maize	cytosol	51.26	49.63
Os09t0248300-01	Rice	cytosol	50.87	48.52
Os09t0248200-01	Rice	cytosol	50.29	47.71
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	53.97	47.45
CDX86307	Canola	nucleus	87.81	30.41
CDY55572	Canola	nucleus	19.54	28.21
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	88.2	28.2
CDY46317	Canola	cytosol, nucleus, plastid	27.85	27.43
CDX69452	Canola	cytosol	23.79	27.27
CDY34252	Canola	cytosol, nucleus, plastid	27.27	27.01
CDY12290	Canola	cytosol	22.63	26.29
CDY67951	Canola	cytosol	23.4	26.25
CDY67200	Canola	cytosol, nucleus	6.38	23.57
CDY19713	Canola	cytosol	13.54	23.03
CDY38318	Canola	nucleus	22.44	21.85
CDX99994	Canola	peroxisome	13.35	20.66
CDY05835	Canola	cytosol, nucleus, plastid	13.73	19.78
CDY38847	Canola	nucleus, plastid	19.92	17.28
CDY32645	Canola	nucleus	19.34	17.15
CDX71688	Canola	nucleus	18.18	16.07
CDX86173	Canola	cytosol	20.31	12.15
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	20.7	12.0
CDX99996	Canola	extracellular	2.9	9.32
CDY19712	Canola	cytosol, nucleus, peroxisome	5.42	5.85
CDX99995	Canola	cytosol, nucleus, peroxisome	5.42	5.85

Protein Annotations

EnsemblPlants:CDY05684	EnsemblPlantsGene:GSBRNA2T00120685001	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791	PANTHER:PTHR31791:SF12
PFAM:PF07899	ProteinID:CDY05684	ProteinID:CDY05684.1	SEG:seg	UniParc:UPI0004EF2B28	MapMan:35.1

Description

BnaC02g38530D

Coordinates

chrLK031963:-:910273..912759

Molecular Weight (calculated)

57750.8 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.526

Length

517 amino acids

Sequence
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLRW NELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KASLERLQKK
101: RDGAVFAINT ALDKYNNNNA PNISAKAFAA EDENLDGTVQ DVEISPVKAY PELVKLCRDM DSAGLHKFVS DNRKNLALLK EEIPVALKYA ANPGTLVLDS
201: LEGFYPTTTD GKKDANLLGT RRTCIMVMEC LSVLLSGLDS NSLVAVLSES VKDRAKGVAE GWSPLLETID MDAGNGNSLE AHAFLQLLAT FGIVSDFKED
301: GILKLIPMVS RRRQAAELCR SLGLSEKMPG VIEVLVNSGK QIDAVNLAFA FGLTEKFPPV ELLKCYLTEA TRSSSQGNAS PADEFSEREL TGLKAVIKCV
401: EEHNLEEQYP VEPLHKRILQ LEKAKAEKKR ATEPTKPQTK RPRGPQPRVT ENNNKTGYGR VIPERYPQYV YDNRPFLNGP IMAAQAPPPQ TYTFSPAPAH
501: GNFYGNCYQY QAPPYFH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.