Factsheet for HORVU5Hr1G051330.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G021800.1
HORVU1Hr1G092980.14
HORVU3Hr1G033190.1
HORVU3Hr1G055550.3
HORVU3Hr1G114440.21
HORVU4Hr1G024710.4
HORVU5Hr1G048010.1
HORVU5Hr1G104870.1
HORVU7Hr1G034850.1
HORVU7Hr1G082720.10

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	HORVU0Hr1G021800.1	AT1G01440.1	21798944
AT5G48385.1	HORVU1Hr1G092980.14	AT1G01440.1	21798944
AT5G48385.1	HORVU3Hr1G055550.3	AT1G01440.1	21798944
AT5G48385.1	HORVU7Hr1G082720.10	AT1G01440.1	21798944
AT5G48385.1	HORVU3Hr1G114440.21	AT1G15570.1	21798944
AT5G48385.1	HORVU4Hr1G024710.4	AT3G08530.1	21798944
AT5G48385.1	HORVU5Hr1G048010.1	AT3G08530.1	21798944
AT5G48385.1	HORVU7Hr1G034850.1	AT3G13990.1	21798944
AT5G48385.1	HORVU3Hr1G033190.1	AT3G22440.1	21798944
AT5G48385.1	HORVU5Hr1G104870.1	AT3G22440.1	21798944
AT5G48385.1	HORVU3Hr1G033190.1	AT4G14900.1	21798944
AT5G48385.1	HORVU5Hr1G104870.1	AT4G14900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G168100.1	Wheat	cytosol	97.59	97.59
TraesCS5D01G172300.2	Wheat	cytosol	98.52	95.85
TraesCS5B01G164900.2	Wheat	cytosol	97.59	94.95
EES02294	Sorghum	nucleus	82.0	82.46
Zm00001d019890_P001	Maize	nucleus	79.96	80.71
Zm00001d005107_P001	Maize	cytosol	79.96	80.71
Zm00001d019892_P001	Maize	nucleus	60.3	80.25
Os09t0248200-01	Rice	cytosol	79.78	78.9
Os09t0248300-01	Rice	cytosol	79.22	78.78
GSMUA_Achr2P05710_001	Banana	nucleus	25.79	71.65
GSMUA_Achr8P29000_001	Banana	nucleus	64.94	64.81
GSMUA_Achr9P08130_001	Banana	cytosol	60.67	60.56
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	65.31	59.86
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	57.88	55.42
KRH66282	Soybean	cytosol	55.66	54.95
KRH07289	Soybean	cytosol	55.29	54.58
Bra020704.1-P	Field mustard	cytosol	51.95	53.95
CDY48750	Canola	cytosol	52.69	53.89
CDY05684	Canola	cytosol	51.58	53.77
KRH66280	Soybean	cytosol	54.17	53.68
PGSC0003DMT400071153	Potato	nucleus	54.17	53.58
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	21.15	53.52
PGSC0003DMT400053214	Potato	cytosol	54.17	53.48
Solyc06g082930.2.1	Tomato	nucleus	53.06	53.46
Solyc06g007640.2.1	Tomato	nucleus	52.88	53.17
Bra036176.1-P	Field mustard	cytosol	51.02	52.88
CDY00066	Canola	cytosol	51.95	52.43
Bra037489.1-P	Field mustard	cytosol	52.13	51.37
AT5G48385.1	Thale cress	cytosol	52.88	51.08
HORVU1Hr1G088810.2	Barley	nucleus	34.32	29.7
HORVU5Hr1G104870.1	Barley	cytosol	26.35	25.59
HORVU3Hr1G033190.1	Barley	nucleus	3.9	19.81
HORVU4Hr1G071420.1	Barley	cytosol, plastid	17.63	19.11
CDX86307	Canola	nucleus	51.95	18.75
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	52.32	17.44
HORVU3Hr1G021380.1	Barley	nucleus	12.62	17.22
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.84	15.04
HORVU0Hr1G036250.1	Barley	cytosol	5.75	14.83
HORVU3Hr1G033180.1	Barley	cytosol, nucleus	4.45	14.72
HORVU3Hr1G033120.2	Barley	nucleus	6.86	13.7
Bra037488.1-P	Field mustard	cytosol	0.19	0.11

Protein Annotations

EnsemblPlants:HORVU5Hr1G051330.1	EnsemblPlantsGene:HORVU5Hr1G051330	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	UniParc:UPI00029544FC	UniProt:M0VT01	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:M0VT01]

Coordinates

chrchr5H:-:400827336..400880830

Molecular Weight (calculated)

60861.1 Da

IEP (calculated)

7.881

GRAVY (calculated)

-0.513

Length

539 amino acids

Sequence
(BLAST)

001: MSDMESVATL MESTSLKIQQ LQQAFAELES QSAVTMNFKW KQLEDHFRGL EQSLKKKFDE LKKQEKEFQE TVAKSEKMLE QQEAVVVAKE LTSLERLQEK
101: RDAALAMIFG KSKLSLNTNY ITPMNKPQGN YTVGTLDVKW PKHSPEGNAR LQDGNAAVKP RSELAILCEE MNVKGLHKFI SDNRKNLTSI REEIPSALKG
201: ASQPYVLVLD SLEDFYSGDN LVLDGKKDGD LLGVRRTCLM LMESLVQLQA DDITGLLSEG QMFATNVKDR AKKIAFEWKS KLDSLDIDAS NGNCLEAHAF
301: LQLLATFGIF SEFNEDELCK LLPSVSRRRQ TPELCRLLGL SQKMPGVIGV LVDSARPIDA INLAYAFGLT EQFEPVQLLK AYLREVKKVS HGKNGKMSPG
401: AQNEMNEREL SALKAVIKCI EEHKLEEQYP VDPLQKRVIQ LEKAKADKRR AVEAAKPQSK RPRANGSLYA PRVTSFPEKS FYQATPERHP YPYERQFVYG
501: AEAHHHPTMI NGAPYTISPT HTPYYGNGYP VQYQVPYIH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.