Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G055420.1 | |
| HORVU5Hr1G122680.1 | |
| HORVU6Hr1G081380.8 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G329000.1 | Wheat | plastid | 72.93 | 78.38 |
| TraesCS5B01G543400.1 | Wheat | plastid | 74.44 | 76.01 |
| TraesCS5D01G544800.1 | Wheat | mitochondrion | 75.94 | 72.01 |
| Os03t0851400-01 | Rice | extracellular | 38.16 | 46.35 |
| EER93089 | Sorghum | plastid | 40.23 | 46.32 |
| VIT_19s0014g00030.t01 | Wine grape | cytosol, golgi, nucleus | 15.6 | 28.52 |
| Solyc03g117910.2.1 | Tomato | plastid | 14.66 | 22.61 |
| AT4G00650.1 | Thale cress | plastid | 12.78 | 21.66 |
| CDY05835 | Canola | cytosol, nucleus, plastid | 14.29 | 21.17 |
| Bra035723.1-P | Field mustard | plastid | 14.29 | 20.77 |
| PGSC0003DMT400084922 | Potato | cytosol | 15.04 | 20.2 |
| KRH63904 | Soybean | nucleus | 17.86 | 15.81 |
| KRH54046 | Soybean | nucleus | 17.48 | 15.71 |
| CDX71688 | Canola | nucleus | 16.73 | 15.21 |
| CDY32645 | Canola | nucleus | 16.35 | 14.92 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 15.04 | 14.84 |
| Bra029192.1-P | Field mustard | nucleus, plastid | 16.17 | 14.65 |
| Solyc03g117930.2.1 | Tomato | nucleus | 16.17 | 14.63 |
| CDY38847 | Canola | nucleus, plastid | 16.35 | 14.6 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 14.85 | 14.23 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 13.16 | 14.08 |
| Solyc12g042440.1.1 | Tomato | nucleus, plastid | 14.47 | 14.08 |
| PGSC0003DMT400037427 | Potato | nucleus, plastid | 13.91 | 13.38 |
| PGSC0003DMT400080000 | Potato | nucleus | 18.23 | 12.88 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 14.85 | 12.68 |
| PGSC0003DMT400080001 | Potato | nucleus | 16.54 | 12.29 |
| Solyc04g072200.1.1 | Tomato | cytosol | 15.79 | 11.68 |
| PGSC0003DMT400094724 | Potato | nucleus | 17.11 | 11.67 |
| Solyc06g074450.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 12.03 | 11.19 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 4.14 | 10.53 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 4.89 | 9.63 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 2.26 | 7.36 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 5.45 | 7.34 |
| VIT_19s0014g00060.t01 | Wine grape | nucleus | 4.32 | 7.26 |
| Solyc03g117920.1.1 | Tomato | nucleus | 3.2 | 4.76 |
| HORVU3Hr1G033190.1 | Barley | nucleus | 0.38 | 1.89 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G122680.1 | EnsemblPlantsGene:HORVU5Hr1G122680 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF28 |
| PFAM:PF07899 | SEG:seg | UniParc:UPI000B4687F8 | UniProt:A0A287T058 | MapMan:35.2 | : |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287T058]
Coordinates
chrchr5H:+:662631137..662638487
Molecular Weight (calculated)
57985.5 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.172
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: RSFLRWLARD LSIVYSSEAM PACPTGNSSP PLPDSPMPPP PPPAVSPTSA AAPDASLPAI ASTVEGLASF SDVLADFLHQ WNALLLDADS IAAALPPLAD
101: PEADTNPEPM PIPVGDRAGL LGQCNPVLAA AAAASPLADR VADESNPRSP DPVAERRELS PVPAPEEDPL HQRYESNPRP DPVVEHREHS PVPAPPAARF
201: PVAVPVPEPE PEPVLPVGLE PVRAPNPIPK PAPGRERRAG EPSAEMLGTI CEQMGSRSLR GFVARHLRDR AWLRRVGPGA LRLAPDPAVL VLRAVSRCYI
301: CAESENAETA CVLLLELYLR AGCPRRPEAE AELRAEARVA ALSWRSRIVR DKGQVADASP RDARGLILLM AGFGVPPEFP LQEFYELLLA GGCLTCVEVL
401: RCSQLFMKKL RDVVAHMLNR GIYREAIGVI LAFDLQEAFP ITGVLTFIVD KVVCNRKEQE SEAECDLVGS KERDEEELLL WRSISKYVEE RTPCFSEMSC
501: PSFVERIKVL EERVGKPDQV FLSEESRETS FF
101: PEADTNPEPM PIPVGDRAGL LGQCNPVLAA AAAASPLADR VADESNPRSP DPVAERRELS PVPAPEEDPL HQRYESNPRP DPVVEHREHS PVPAPPAARF
201: PVAVPVPEPE PEPVLPVGLE PVRAPNPIPK PAPGRERRAG EPSAEMLGTI CEQMGSRSLR GFVARHLRDR AWLRRVGPGA LRLAPDPAVL VLRAVSRCYI
301: CAESENAETA CVLLLELYLR AGCPRRPEAE AELRAEARVA ALSWRSRIVR DKGQVADASP RDARGLILLM AGFGVPPEFP LQEFYELLLA GGCLTCVEVL
401: RCSQLFMKKL RDVVAHMLNR GIYREAIGVI LAFDLQEAFP ITGVLTFIVD KVVCNRKEQE SEAECDLVGS KERDEEELLL WRSISKYVEE RTPCFSEMSC
501: PSFVERIKVL EERVGKPDQV FLSEESRETS FF
001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
Arabidopsis Description
FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.