Factsheet for Bra029192.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008624.1-P
Bra015180.1-P
Bra029192.1-P
Bra035723.1-P
Bra040110.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Bra015180.1-P	AT2G06005.1	19429606
AT4G00650.1	Bra029192.1-P	AT4G00650.1	17138694
AT4G00650.1	Bra035723.1-P	AT4G00650.1	17138694
AT4G00650.1	Bra029192.1-P	AT4G00650.1	19429606
AT4G00650.1	Bra035723.1-P	AT4G00650.1	19429606
AT4G00650.1	Bra040110.1-P	AT4G17060.1	19429606
AT4G00650.1	Bra008624.1-P	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38847	Canola	nucleus, plastid	98.47	96.98
Bra035723.1-P	Field mustard	plastid	43.44	69.67
AT4G00650.1	Thale cress	plastid	27.77	51.91
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	19.25	38.83
KRH63904	Soybean	nucleus	32.03	31.28
KRH54046	Soybean	nucleus	31.35	31.08
Solyc03g117910.2.1	Tomato	plastid	16.01	27.25
Solyc03g117930.2.1	Tomato	nucleus	27.26	27.21
PGSC0003DMT400037427	Potato	nucleus, plastid	24.36	25.86
Solyc12g042440.1.1	Tomato	nucleus, plastid	23.68	25.41
PGSC0003DMT400084922	Potato	cytosol	15.84	23.48
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	22.49	23.08
VIT_19s0014g00060.t01	Wine grape	nucleus	12.44	23.03
PGSC0003DMT400080001	Potato	nucleus	26.24	21.51
Solyc04g072200.1.1	Tomato	cytosol	25.55	20.86
Os03t0851400-01	Rice	extracellular	15.16	20.32
PGSC0003DMT400080000	Potato	nucleus	25.89	20.19
Bra020704.1-P	Field mustard	cytosol	17.21	19.46
PGSC0003DMT400094724	Potato	nucleus	25.72	19.36
EER93089	Sorghum	plastid	14.99	19.05
Solyc03g117920.1.1	Tomato	nucleus	11.41	18.77
Bra036176.1-P	Field mustard	cytosol	16.52	18.65
Bra023207.1-P	Field mustard	cytosol	14.31	18.22
Bra037489.1-P	Field mustard	cytosol	16.52	17.73
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	15.33	16.85
Bra008624.1-P	Field mustard	cytosol	12.95	16.85
TraesCS4A01G329000.1	Wheat	plastid	13.8	16.36
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.65	16.17
TraesCS5B01G543400.1	Wheat	plastid	13.46	15.16
TraesCS5D01G544800.1	Wheat	mitochondrion	14.14	14.79
Bra036105.1-P	Field mustard	nucleus	15.33	10.79
Bra009973.1-P	Field mustard	cytosol	15.67	10.59
Bra037488.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

MapMan:35.1	ProteinID:AEJ81950	ProteinID:AEJ81950.1	EnsemblPlantsGene:Bra029192	EnsemblPlants:Bra029192.1	EnsemblPlants:Bra029192.1-P
ncoils:Coil	InterPro:Frigida	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	EMBL:JN015481	UniProt:M4EK75	PFAM:PF07899
PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	UniParc:UPI0002540164	SEG:seg	:	:

Description

AT4G00650 (E=2e-076) FRI, FLA | FRI (FRIGIDA); protein heterodimerization/ protein homodimerization

Coordinates

chrA03:-:6779863..6782013

Molecular Weight (calculated)

65701.0 Da

IEP (calculated)

8.515

GRAVY (calculated)

-0.470

Length

587 amino acids

Sequence
(BLAST)

001: MAVRNGSLLP APSTREEEQP SSAMIQRREA QATVETVPTN IETTIEQSND PQFLKSIVDL TALAAAVDAF KRRYDELQSH MDYIGNAIDS NLKTNGIIET
101: AAASPPPQNK TATAIACQSP PKEKSEAERF CESMWSKELR RYMFVNISER AKLIEEIPGA LKLAKDPAKF VLDCIGKFYL QGRKAFAKDL PAITARKVSL
201: LILECYLLTF DPEGEKKKKL LVSSVKDEAE AAAVAWKKRL VGEGWLGAAE AMDARGLLLL VACFGIPESF KSMDLLDLIR QSGTDEIVGA LKRSPFLVPM
301: MSGIVDSSIK RGMHIEALEL VYTFGMEDRF SPSSILTSFL RMRKDSFERA KRQAQAPMAS KTANEKQLDA LSSVMKCLEA HKLDPAKEVP GWQIKEQMAK
401: LEKDIVQLDK QMEEARSISR MEEARSISIR EEAAISERLY NQQMKRPRLS EMEMPPTAAA SYSPMYRDHR SFPSHREGDA DEISALVSSY LGPSSGFPHR
501: SGLMRSPEYM VPPGGLGRSV YAYDHLPPNS YSPVHGQRRP QEYPPPVHGQ HQMPYRLYRH SPSVERHLAL SNHRTPRNLS QDRIGGM

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.