Factsheet for Solyc03g117910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117910.2.1
Solyc03g117920.1.1
Solyc03g117930.2.1
Solyc04g072200.1.1
Solyc06g074450.1.1
Solyc08g007170.1.1
Solyc12g009100.1.1
Solyc12g042440.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Solyc12g009100.1.1	AT2G06005.1	19429606
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	17138694
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	17138694
AT4G00650.1	Solyc03g117910.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117920.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc03g117930.2.1	AT4G00650.1	19429606
AT4G00650.1	Solyc04g072200.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc06g074450.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc12g042440.1.1	AT4G00650.1	19429606
AT4G00650.1	Solyc08g007170.1.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	29.57	35.05
AT4G00650.1	Thale cress	plastid	26.96	29.62
Solyc03g117930.2.1	Tomato	nucleus	47.83	28.06
CDY05835	Canola	cytosol, nucleus, plastid	26.09	25.07
Bra035723.1-P	Field mustard	plastid	26.09	24.59
Solyc04g072200.1.1	Tomato	cytosol	43.19	20.72
Solyc12g042440.1.1	Tomato	nucleus, plastid	31.59	19.93
KRH54046	Soybean	nucleus	30.43	17.74
KRH63904	Soybean	nucleus	29.57	16.97
CDY32645	Canola	nucleus	27.25	16.12
CDX71688	Canola	nucleus	27.25	16.07
Bra029192.1-P	Field mustard	nucleus, plastid	27.25	16.01
Os03t0851400-01	Rice	extracellular	20.29	15.98
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	26.09	15.73
CDY38847	Canola	nucleus, plastid	26.96	15.6
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	22.61	14.66
EER93089	Sorghum	plastid	19.42	14.5
TraesCS4A01G329000.1	Wheat	plastid	20.58	14.34
TraesCS5B01G543400.1	Wheat	plastid	21.16	14.01
TraesCS5D01G544800.1	Wheat	mitochondrion	20.58	12.66
Solyc06g082930.2.1	Tomato	nucleus	18.84	12.15
Solyc06g007640.2.1	Tomato	nucleus	18.55	11.94
Solyc09g076050.2.1	Tomato	nucleus	17.68	11.87
Solyc04g008840.2.1	Tomato	nucleus	18.55	10.63
Solyc11g071340.1.1	Tomato	nucleus	12.17	8.77
Solyc03g117920.1.1	Tomato	nucleus	2.32	2.24
VIT_19s0014g00060.t01	Wine grape	nucleus	1.45	1.58

Protein Annotations

EnsemblPlants:Solyc03g117910.2.1	EnsemblPlantsGene:Solyc03g117910.2	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	SEG:seg	UniParc:UPI000276788E	UniProt:K4BLU2	MapMan:35.1

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4BLU2]

Coordinates

chr3:+:66906543..66909319

Molecular Weight (calculated)

39646.2 Da

IEP (calculated)

7.502

GRAVY (calculated)

-0.679

Length

345 amino acids

Sequence
(BLAST)

001: MADNAATSSA NLRKLSDSLL ALQCCLTELN QHINSVRSII PSVIPGVATN ISTLLPTSSP PATEPLLKSE SSWESDPSEE EEEEKEEKEE EEKEEKEKKE
101: EEELRSRRSE EVQSPHRSEL KFPHSSELKS SRSKEVQFPH RSELESFCKS MNSSELRRYM VTRVSDTNRL LEEVPKALRL SPHPARLVLD STGKIYFQGS
201: NSYTKNSRMV WRRKAAVLVL ECFLLMRVDK VEIEKEVKEE ADKAALAWRK RMIAEGGVRK ACEMDARGLL LLLGCFGIPG GFSNENIRDL LLISHITKIY
301: RALRRSNVLK AKIPDTEWRY IQCLNSNDQN LKYLLNSQHH YWRDK

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.