Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047832 | Potato | nucleus | 94.78 | 85.34 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 45.93 | 41.28 |
| KRH41582 | Soybean | nucleus | 41.34 | 38.08 |
| KRH60292 | Soybean | nucleus | 40.5 | 37.31 |
| GSMUA_Achr10P... | Banana | nucleus | 34.86 | 32.18 |
| Solyc09g076050.2.1 | Tomato | nucleus | 29.44 | 27.43 |
| Solyc06g082930.2.1 | Tomato | nucleus | 24.63 | 22.06 |
| Solyc06g007640.2.1 | Tomato | nucleus | 24.01 | 21.46 |
| Solyc04g008840.2.1 | Tomato | nucleus | 26.1 | 20.76 |
| Os01t0181000-00 | Rice | nucleus | 25.68 | 20.67 |
| KXG31679 | Sorghum | nucleus | 25.68 | 19.43 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 25.68 | 19.25 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 25.26 | 18.5 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 24.84 | 18.09 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 24.63 | 17.91 |
| HORVU3Hr1G021380.1 | Barley | nucleus | 12.53 | 15.19 |
| Solyc03g117930.2.1 | Tomato | nucleus | 16.49 | 13.44 |
| Solyc12g042440.1.1 | Tomato | nucleus, plastid | 14.82 | 12.98 |
| Solyc03g117910.2.1 | Tomato | plastid | 8.77 | 12.17 |
| Solyc03g117920.1.1 | Tomato | nucleus | 8.98 | 12.04 |
| Solyc04g072200.1.1 | Tomato | cytosol | 16.28 | 10.85 |
| Solyc06g074450.1.1 | Tomato | cytosol, mitochondrion, nucleus, peroxisome | 11.69 | 9.79 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 5.01 | 8.89 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 3.34 | 7.66 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 1.04 | 3.07 |
Protein Annotations
| EnsemblPlants:Solyc11g071340.1.1 | EnsemblPlantsGene:Solyc11g071340.1 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF10 | PFAM:PF07899 | SEG:seg | UniParc:UPI00027696B4 | UniProt:K4DAJ1 | MapMan:35.1 |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:K4DAJ1]
Coordinates
chr11:-:54853863..54858597
Molecular Weight (calculated)
52437.2 Da
IEP (calculated)
9.656
GRAVY (calculated)
-0.535
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MAADTVTNLE PIHTFFNNLE ARQTLLTTIT DLNKTLTTHF TSINNTLCQK SETLDTRIRT FKEKTEDALL KIQNRENALP DRESSMGARI VEMKDSAISE
101: IESLGDLSEK SLAEVLRSYC KRMDASGLVG FIQSKRKEPA GLRMEIAAAL ESSVDPMRLI LDAAEEFVGR KVEKKAILAD RRWACDMLIQ SVVPVVEGGY
201: GAGRSLKERA ARVLEKWKGV LGGGDRNSGV YIIEELLKSG KEVEAVYFAT ESGLSERYPP LSLLKLSLRN CRRNANNISK KGKFSPAAVE KANSIELEAT
301: KALIKCVEDH KLEQEFTLEG LKQRVTELEQ AKAKKKIGTT PESKPSKKRG RGGGTGRSSG PSTSRPVKSG RSSNATPFRS RNPPQSHQAP PIRYTGAHSY
401: TSQSVYEAPS SVSYAPAYSG THTQSPAILA PQYGYALQEA GVSGVRSYHG SYGGEAVYSA YDYTLTPTAP AYPPSYPPR
101: IESLGDLSEK SLAEVLRSYC KRMDASGLVG FIQSKRKEPA GLRMEIAAAL ESSVDPMRLI LDAAEEFVGR KVEKKAILAD RRWACDMLIQ SVVPVVEGGY
201: GAGRSLKERA ARVLEKWKGV LGGGDRNSGV YIIEELLKSG KEVEAVYFAT ESGLSERYPP LSLLKLSLRN CRRNANNISK KGKFSPAAVE KANSIELEAT
301: KALIKCVEDH KLEQEFTLEG LKQRVTELEQ AKAKKKIGTT PESKPSKKRG RGGGTGRSSG PSTSRPVKSG RSSNATPFRS RNPPQSHQAP PIRYTGAHSY
401: TSQSVYEAPS SVSYAPAYSG THTQSPAILA PQYGYALQEA GVSGVRSYHG SYGGEAVYSA YDYTLTPTAP AYPPSYPPR
001: MESSPDPGEL IKSSQPSFFE FQKQASLMTS CNLLWKELSE HFTSMEQNLM KKSEALRQMI ETLDNQTQSS IELLKHREVT IDHSVEIAEG KVEERVRAAL
101: DSLEKARDCG DEDTGEVDDG DGLLSALKSL CLKMDARGFW GFVIARKKEL ENLRSQIPVA LVDCVDPPKL VLEAVSEVFP VDKRGGGEKV SNDFGWACVV
201: ILESLIPVMV DPVMGKSRLL VTPSVKEKAK EIAETWKASL EERGGIENVK TPDVHTFLQH LVTFGIVKKD DLALYRKLVV GSAWRKQMPK LAVSVGLGDQ
301: MPDMIEELII RGQQLDAVHF TFEVGLVHLF PPVPLLKAYL RDAKKATALI TDDSNNSGRS AHLVARKEQS ALRAVLKCIE EYKLEEEFPP ENLKKRLDQL
401: EKTKTEKRKP AVIPANKRTR ASYSGPMPPA KAGRITNAYV SSFPPPPPTF IRSQSHSPQY GVPAYTTSPP TIYSNRSPPY QYSPEAVHGS YQTSPVSYPT
501: AYGTYCSPVA APPPPVYHPH PHHHHHIQHA YY
101: DSLEKARDCG DEDTGEVDDG DGLLSALKSL CLKMDARGFW GFVIARKKEL ENLRSQIPVA LVDCVDPPKL VLEAVSEVFP VDKRGGGEKV SNDFGWACVV
201: ILESLIPVMV DPVMGKSRLL VTPSVKEKAK EIAETWKASL EERGGIENVK TPDVHTFLQH LVTFGIVKKD DLALYRKLVV GSAWRKQMPK LAVSVGLGDQ
301: MPDMIEELII RGQQLDAVHF TFEVGLVHLF PPVPLLKAYL RDAKKATALI TDDSNNSGRS AHLVARKEQS ALRAVLKCIE EYKLEEEFPP ENLKKRLDQL
401: EKTKTEKRKP AVIPANKRTR ASYSGPMPPA KAGRITNAYV SSFPPPPPTF IRSQSHSPQY GVPAYTTSPP TIYSNRSPPY QYSPEAVHGS YQTSPVSYPT
501: AYGTYCSPVA APPPPVYHPH PHHHHHIQHA YY
Arabidopsis Description
FRL4BFRIGIDA-like protein 4b [Source:UniProtKB/Swiss-Prot;Acc:Q940H8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.