Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G033190.1 | Barley | nucleus | 26.08 | 97.17 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 65.57 | 95.93 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 44.3 | 83.73 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 31.9 | 77.3 |
| TraesCS3D01G119200.1 | Wheat | cytosol, nucleus, plastid | 92.41 | 55.39 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 91.39 | 54.86 |
| TraesCS3A01G117300.1 | Wheat | cytosol, nucleus, plastid | 90.38 | 54.59 |
| Os01t0181000-00 | Rice | nucleus | 52.91 | 35.13 |
| KXG31679 | Sorghum | nucleus | 52.91 | 33.02 |
| Zm00001d039594_P001 | Maize | extracellular, plasma membrane | 51.9 | 32.08 |
| GSMUA_Achr10P... | Banana | nucleus | 25.57 | 19.46 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 22.53 | 16.7 |
| KRH60292 | Soybean | nucleus | 21.52 | 16.35 |
| KRH41582 | Soybean | nucleus | 20.76 | 15.77 |
| PGSC0003DMT400047832 | Potato | nucleus | 21.01 | 15.6 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 20.0 | 14.23 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 17.22 | 12.62 |
| Solyc11g071340.1.1 | Tomato | nucleus | 15.19 | 12.53 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 17.97 | 11.4 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 10.63 | 8.45 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 7.34 | 5.45 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G021380.1 | EnsemblPlantsGene:HORVU3Hr1G021380 | GO:GO:0000003 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF10 | PFAM:PF07899 | SEG:seg | UniParc:UPI000B47E69D | UniProt:A0A287KDN4 | MapMan:35.1 |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A287KDN4]
Coordinates
chrchr3H:-:69607049..69611539
Molecular Weight (calculated)
43378.0 Da
IEP (calculated)
4.273
GRAVY (calculated)
-0.737
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEADDVDNA AVPDKKVKQA DAKEEEEEEE EDEDEEEEEE EEEEEEVEEV EEEEAEEEGD PEELVAASGD EEEENPEEVD NETQEDPEEA GMEALKEKKG
101: EEVKVVVPAD EKIAEEAGKS EVKEESKATG EVVKEGENGA LWRAEAHLFL QMVAAFGLKD KFDGEFLKSL FVANRRRKEL ARFAYILGFE ETVADVVQEL
201: LTSGNVIEGI YIAHEACLLE RFPPAPLLHS YIKDSTEKAQ AMLSSGRRSS SAVEESKSLE CNACKVVIRC VESCQLVPVF NIDHLKKKVA RMVREKADRK
301: RLGSGNRFQN KRARGAAGPQ SFPAAKSARA SGSGYGPSFQ NPVSRSFGYA ARAGYVNPAA AAQPYYAPGS MAARRGGVLY GGPGAAFGAQ QPYHR
101: EEVKVVVPAD EKIAEEAGKS EVKEESKATG EVVKEGENGA LWRAEAHLFL QMVAAFGLKD KFDGEFLKSL FVANRRRKEL ARFAYILGFE ETVADVVQEL
201: LTSGNVIEGI YIAHEACLLE RFPPAPLLHS YIKDSTEKAQ AMLSSGRRSS SAVEESKSLE CNACKVVIRC VESCQLVPVF NIDHLKKKVA RMVREKADRK
301: RLGSGNRFQN KRARGAAGPQ SFPAAKSARA SGSGYGPSFQ NPVSRSFGYA ARAGYVNPAA AAQPYYAPGS MAARRGGVLY GGPGAAFGAQ QPYHR
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Arabidopsis Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.