Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G021380.1 | Barley | nucleus | 97.17 | 26.08 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 31.13 | 6.32 |
| PGSC0003DMT400077344 | Potato | nucleus | 27.36 | 5.64 |
| Solyc09g076050.2.1 | Tomato | nucleus | 26.42 | 5.45 |
| KRG91301 | Soybean | cytosol | 26.42 | 5.34 |
| KRH35520 | Soybean | cytosol | 25.47 | 5.09 |
| AT4G14900.1 | Thale cress | nucleus | 23.58 | 4.7 |
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 23.58 | 4.7 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 24.53 | 4.68 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 22.64 | 4.6 |
| CDY46317 | Canola | cytosol, nucleus, plastid | 22.64 | 4.57 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 22.64 | 4.49 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 19.81 | 3.9 |
| HORVU1Hr1G088810.2 | Barley | nucleus | 20.75 | 3.53 |
| HORVU4Hr1G071420.1 | Barley | cytosol, plastid | 13.21 | 2.82 |
| CDY38318 | Canola | nucleus | 13.21 | 2.64 |
| HORVU0Hr1G036250.1 | Barley | cytosol | 3.77 | 1.91 |
| HORVU3Hr1G033180.1 | Barley | cytosol, nucleus | 1.89 | 1.23 |
| HORVU5Hr1G122680.1 | Barley | mitochondrion, peroxisome, plastid | 1.89 | 0.38 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 0.0 | 0.0 |
| HORVU3Hr1G033120.2 | Barley | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G033190.1 | EnsemblPlantsGene:HORVU3Hr1G033190 | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF10 | SEG:seg | UniParc:UPI000B47F76B |
| UniProt:A0A287KPI8 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:173277631..173279233
Molecular Weight (calculated)
11012.8 Da
IEP (calculated)
11.726
GRAVY (calculated)
-0.656
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MVREKADWKR LGSGNRFQNK RARGAAGPQS FPAAKSARAS GSGSGYGPSF QNPVSRSFGY AARAGYVNPA AAAQPYYAPG SMAARRGGVL YGGPGAAFGA
101: QQPYHR
101: QQPYHR
001: MFKKATLNLS LAPLLLVFLF LLSCVVHGVD EKKILSVHNN IWSPKKSYEA STSCFSRSLG KGRESTTLEM KHRELCSGKT IDLGKKMRRA LVLDNIRVQS
101: LQLKIKAMTS STTEQSVSET QIPLTSGIKL ESLNYIVTVE LGGKNMSLIV DTGSDLTWVQ CQPCRSCYNQ QGPLYDPSVS SSYKTVFCNS STCQDLVAAT
201: SNSGPCGGNN GVVKTPCEYV VSYGDGSYTR GDLASESILL GDTKLENFVF GCGRNNKGLF GGSSGLMGLG RSSVSLVSQT LKTFNGVFSY CLPSLEDGAS
301: GSLSFGNDSS VYTNSTSVSY TPLVQNPQLR SFYILNLTGA SIGGVELKSS SFGRGILIDS GTVITRLPPS IYKAVKIEFL KQFSGFPTAP GYSILDTCFN
401: LTSYEDISIP IIKMIFQGNA ELEVDVTGVF YFVKPDASLV CLALASLSYE NEVGIIGNYQ QKNQRVIYDT TQERLGIVGE NCRV
101: LQLKIKAMTS STTEQSVSET QIPLTSGIKL ESLNYIVTVE LGGKNMSLIV DTGSDLTWVQ CQPCRSCYNQ QGPLYDPSVS SSYKTVFCNS STCQDLVAAT
201: SNSGPCGGNN GVVKTPCEYV VSYGDGSYTR GDLASESILL GDTKLENFVF GCGRNNKGLF GGSSGLMGLG RSSVSLVSQT LKTFNGVFSY CLPSLEDGAS
301: GSLSFGNDSS VYTNSTSVSY TPLVQNPQLR SFYILNLTGA SIGGVELKSS SFGRGILIDS GTVITRLPPS IYKAVKIEFL KQFSGFPTAP GYSILDTCFN
401: LTSYEDISIP IIKMIFQGNA ELEVDVTGVF YFVKPDASLV CLALASLSYE NEVGIIGNYQ QKNQRVIYDT TQERLGIVGE NCRV
Arabidopsis Description
At1g79720 [Source:UniProtKB/TrEMBL;Acc:Q8RX60]
SUBAcon: [golgi,extracellular,vacuole]
SUBAcon: [golgi,extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.