Factsheet for GSMUA_Achr4P28440_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P02250_001
GSMUA_Achr2P05710_001
GSMUA_Achr2P12700_001
GSMUA_Achr2P16570_001
GSMUA_Achr3P04280_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P12080_001
GSMUA_Achr3P16830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P21850_001
GSMUA_Achr4P28440_001
GSMUA_Achr4P30910_001
GSMUA_Achr4P30930_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P17510_001
GSMUA_Achr6P24180_001
GSMUA_Achr7P01520_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P08440_001
GSMUA_Achr8P29000_001
GSMUA_Achr9P08130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	GSMUA_Achr4P30910_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr4P30930_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr10P...	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P21850_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P17510_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P24180_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr8P08440_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P04280_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr3P12080_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_AchrUn_...	AT4G14900.1	21798944
AT4G14900.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr2P05710_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr3P16830_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr8P29000_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr9P08130_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr2P16570_001	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01520_001	Banana	nucleus	70.36	44.26
GSMUA_Achr2P12700_001	Banana	nucleus	70.03	43.97
VIT_05s0020g03470.t01	Wine grape	nucleus	54.4	31.99
Solyc09g076050.2.1	Tomato	nucleus	52.12	31.13
KRG91301	Soybean	cytosol	53.09	31.11
KRH35520	Soybean	cytosol	53.42	30.94
PGSC0003DMT400077344	Potato	nucleus	51.14	30.54
AT4G14900.1	Thale cress	nucleus	51.14	29.51
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	51.14	29.51
CDY46317	Canola	cytosol, nucleus, plastid	49.84	29.14
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	50.49	29.03
CDY34252	Canola	cytosol, nucleus, plastid	49.19	28.93
CDY38318	Canola	nucleus	44.63	25.8
GSMUA_Achr10P...	Banana	nucleus	32.25	19.08
GSMUA_Achr9P08130_001	Banana	cytosol	29.97	17.04
GSMUA_Achr8P29000_001	Banana	nucleus	29.32	16.67
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	28.99	15.14
GSMUA_Achr5P16090_001	Banana	nucleus	28.99	14.64
GSMUA_Achr6P24860_001	Banana	nucleus	19.87	12.58
GSMUA_Achr9P09220_001	Banana	nucleus	14.66	11.36
GSMUA_AchrUn_...	Banana	cytosol, nucleus	2.28	2.99
GSMUA_Achr2P05710_001	Banana	nucleus	1.3	2.06
HORVU3Hr1G033190.1	Barley	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr4P28440_001	EnsemblPlants:GSMUA_Achr4T28440_001	EnsemblPlantsGene:GSMUA_Achr4G28440_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791
PANTHER:PTHR31791:SF2	PFAM:PF07899	SEG:seg	UniParc:UPI0002968B7C	UniProt:M0SSV6	MapMan:35.1

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G28440_001]

Coordinates

chr4:+:26851986..26852909

Molecular Weight (calculated)

34054.3 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.040

Length

307 amino acids

Sequence
(BLAST)

001: MGSEAAAVIP SSVVQQSFAE LEKQRELITS CTLLWKELSD HFSILQQGLE IKSEALRSKR QSLDASTGHA LDSLRRRELS IDSAVELAIA KLDERRAAAV
101: EALSATAAGG DDLDLAEKLR SLCTKMDFNG FFDLVVAKRK EVELLRLELP VALANCIDPA KFVMDAVSGV FPVDKRPVKS PNDLGWACVL VLESLVPVLA
201: DPELGTVRPL ATRNIRERAR EMAKEWKMWL EQHGGIESVK PPDAHTFLQH LVTFGIVGKA DKELYQRLVV NFAWRRQMPK LAISLGLEDK MEGIDFFSGS
301: SFLVIRS

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.