Factsheet for GSMUA_Achr7P01520_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P02250_001
GSMUA_Achr2P05710_001
GSMUA_Achr2P12700_001
GSMUA_Achr2P16570_001
GSMUA_Achr3P04280_001
GSMUA_Achr3P07830_001
GSMUA_Achr3P12080_001
GSMUA_Achr3P16830_001
GSMUA_Achr3P20190_001
GSMUA_Achr3P21850_001
GSMUA_Achr4P28440_001
GSMUA_Achr4P30910_001
GSMUA_Achr4P30930_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P17510_001
GSMUA_Achr6P24180_001
GSMUA_Achr7P01520_001
GSMUA_Achr8P06630_001
GSMUA_Achr8P08440_001
GSMUA_Achr8P29000_001
GSMUA_Achr9P08130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	GSMUA_Achr4P30910_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr4P30930_001	AT1G06450.1	21798944
AT3G22440.1	GSMUA_Achr10P...	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P21850_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P17510_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr6P24180_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr8P08440_001	AT1G33470.1	21798944
AT3G22440.1	GSMUA_Achr3P04280_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr3P12080_001	AT2G04400.1	15714319
AT3G22440.1	GSMUA_Achr2P12700_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr4P28440_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_Achr7P01520_001	AT4G14900.1	21798944
AT3G22440.1	GSMUA_AchrUn_...	AT4G14900.1	21798944
AT4G14900.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT4G14900.1	GSMUA_Achr3P07830_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr3P20190_001	AT3G13990.1	21798944
AT4G14900.1	GSMUA_Achr2P05710_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr3P16830_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr8P29000_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr9P08130_001	AT5G48385.1	21798944
AT4G14900.1	GSMUA_Achr2P16570_001	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P12700_001	Banana	nucleus	83.81	83.64
GSMUA_AchrUn_...	Banana	cytosol, nucleus	38.73	80.77
GSMUA_Achr4P28440_001	Banana	cytosol	44.26	70.36
VIT_05s0020g03470.t01	Wine grape	nucleus	59.84	55.94
Os07t0173200-02	Rice	cytosol	60.66	55.43
KRG91301	Soybean	cytosol	58.4	54.39
KRH35520	Soybean	cytosol	58.2	53.58
PGSC0003DMT400077344	Potato	nucleus	55.33	52.53
Solyc09g076050.2.1	Tomato	nucleus	55.33	52.53
Os03t0794900-01	Rice	nucleus	58.61	52.0
CDY34252	Canola	cytosol, nucleus, plastid	53.48	50.0
CDY46317	Canola	cytosol, nucleus, plastid	53.28	49.52
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	58.4	49.31
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	53.69	49.25
TraesCS5B01G437500.2	Wheat	cytosol	55.94	49.19
TraesCS5A01G434500.1	Wheat	cytosol	55.74	49.1
HORVU5Hr1G104870.1	Barley	cytosol	55.74	49.01
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	53.48	48.88
TraesCS5D01G442300.1	Wheat	cytosol	55.12	48.73
Zm00001d018911_P001	Maize	cytosol	59.84	48.11
AT4G14900.1	Thale cress	nucleus	52.25	47.93
KXG34492	Sorghum	nucleus	60.45	47.73
CDY38318	Canola	nucleus	40.98	37.66
GSMUA_Achr2P05710_001	Banana	nucleus	14.55	36.6
GSMUA_Achr10P...	Banana	nucleus	29.92	28.13
GSMUA_Achr9P08130_001	Banana	cytosol	29.1	26.3
GSMUA_Achr8P29000_001	Banana	nucleus	28.07	25.37
GSMUA_Achr9P09220_001	Banana	nucleus	20.49	25.25
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	28.69	23.81
GSMUA_Achr5P16090_001	Banana	nucleus	28.89	23.19
GSMUA_Achr6P24860_001	Banana	nucleus	22.75	22.89

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01520_001	EnsemblPlants:GSMUA_Achr7T01520_001	EnsemblPlantsGene:GSMUA_Achr7G01520_001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF2	PFAM:PF07899	SEG:seg	UniParc:UPI000294A837	UniProt:M0TDU2
MapMan:35.1	:	:	:	:	:

Description

frigida, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G01520_001]

Coordinates

chr7:+:1204156..1208301

Molecular Weight (calculated)

53737.9 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.442

Length

488 amino acids

Sequence
(BLAST)

001: MGSEAAAVVP TSLVQESFAE LEKQRELITC CTLLWKELSD HFSTLERGIE IKSEALRSKR ESLDGSTRRT LDSLRRRELS IDGAVDLALA KLDERRTAAE
101: VELLRSQLPA ALEDCIDPAK FVIDAISEVF PVDKRPVKSP NDLGWACVLI LESLVPVLAD PELGSARPLV TRSIRERARE MATGWKEGLE QHGGIESVKP
201: PDAHTFLQHV VTFGVIEKDD KNLYRRLVVS FAWRRQMPKL AISLGLEDSM EDIIEELIST GHQLDAINFA YEAGLQDKFP PIPLLKSFLE DSKKATSTSE
301: DRNNYGQTAN TTCRKELSVI RAAMKCIQEH KLEAEFPLDS LQKRLENLEK AKVEKKKPSG AGPANKRTRA NNGGPMPPAK AGRLTNNACV SSFPAGPAYV
401: RSPSAHTTYP AAALYPYDRP SGHGIYGSRS PPALREPYGY PTEEAAPVAL GASYPTPPMT YPAYGAYHNG LGGYNNGLAP GYQQAYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.