CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73279
CDX90948
CDX94822
CDX96615
CDX97257
CDY00860
CDY01349
CDY01921
CDY06214
CDY09972
CDY09974
CDY15081
CDY17450
CDY29496
CDY31508
CDY31859
CDY33653
CDY43301
CDY64806
CDY66247

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	CDY06214	AT1G06450.1	21798944
AT3G22440.1	CDY09972	AT1G06450.1	21798944
AT3G22440.1	CDY09974	AT1G06450.1	21798944
AT3G22440.1	CDX96615	AT1G20880.1	21798944
AT3G22440.1	CDY01349	AT1G20880.1	21798944
AT3G22440.1	CDY29496	AT1G20880.1	21798944
AT3G22440.1	CDY31508	AT1G20880.1	21798944
AT3G22440.1	CDY31859	AT1G20880.1	21798944
AT3G22440.1	CDY33653	AT1G20880.1	21798944
AT3G22440.1	CDX73279	AT1G33470.1	21798944
AT3G22440.1	CDX94822	AT2G04400.1	15714319
AT3G22440.1	CDY00860	AT2G04400.1	15714319
AT3G22440.1	CDY15081	AT2G04400.1	15714319
AT3G22440.1	CDY17450	AT2G04400.1	15714319
AT3G22440.1	CDY43301	AT2G04400.1	15714319
AT3G22440.1	CDY66247	AT2G04400.1	15714319
AT3G22440.1	CDX90948	AT4G02150.1	21798944
AT3G22440.1	CDX97257	AT4G02150.1	21798944
AT3G22440.1	CDY01921	AT4G02150.1	21798944
AT3G22440.1	CDY64806	AT4G02150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34252	Canola	cytosol, nucleus, plastid	96.95	97.51
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	99.05	97.38
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	90.67	89.47
VIT_05s0020g03470.t01	Wine grape	nucleus	69.9	70.31
KRG91301	Soybean	cytosol	67.81	67.94
KRH35520	Soybean	cytosol	68.57	67.92
Solyc09g076050.2.1	Tomato	nucleus	65.9	67.32
PGSC0003DMT400077344	Potato	nucleus	65.14	66.54
CDY38318	Canola	nucleus	67.24	66.48
GSMUA_Achr2P12700_001	Banana	nucleus	50.29	53.99
GSMUA_Achr7P01520_001	Banana	nucleus	49.52	53.28
GSMUA_Achr4P28440_001	Banana	cytosol	29.14	49.84
GSMUA_AchrUn_...	Banana	cytosol, nucleus	22.1	49.57
Os07t0173200-02	Rice	cytosol	46.29	45.51
Os03t0794900-01	Rice	nucleus	45.52	43.45
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	44.76	40.66
Zm00001d018911_P001	Maize	cytosol	46.67	40.36
HORVU5Hr1G104870.1	Barley	cytosol	42.67	40.36
TraesCS5D01G442300.1	Wheat	cytosol	41.71	39.67
TraesCS5A01G434500.1	Wheat	cytosol	41.71	39.53
KXG34492	Sorghum	nucleus	46.48	39.48
TraesCS5B01G437500.2	Wheat	cytosol	41.71	39.46
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	12.57	30.99
CDY67200	Canola	cytosol, nucleus	7.62	28.57
CDY05684	Canola	cytosol	27.43	27.85
CDY48750	Canola	cytosol	27.62	27.51
CDY00066	Canola	cytosol	26.48	26.03
CDY55572	Canola	nucleus	17.33	25.42
CDX69452	Canola	cytosol	21.33	24.83
CDY12290	Canola	cytosol	19.24	22.7
HORVU3Hr1G033190.1	Barley	nucleus	4.57	22.64
CDY67951	Canola	cytosol	19.81	22.56
CDY19713	Canola	cytosol	12.76	22.04
CDX99994	Canola	peroxisome	13.33	20.96
CDX99996	Canola	extracellular	5.52	18.01
CDY05835	Canola	cytosol, nucleus, plastid	12.0	17.55
CDX71688	Canola	nucleus	17.14	15.38
CDY38847	Canola	nucleus, plastid	16.76	14.77
CDY32645	Canola	nucleus	16.38	14.75
CDX86173	Canola	cytosol	18.48	11.23
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	18.48	10.87
CDX86307	Canola	nucleus	26.86	9.44
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	27.62	8.97
CDX99995	Canola	cytosol, nucleus, peroxisome	4.76	5.22
CDY19712	Canola	cytosol, nucleus, peroxisome	4.57	5.01

Protein Annotations

EnsemblPlants:CDY46317	EnsemblPlantsGene:GSBRNA2T00083716001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF2
PFAM:PF07899	ProteinID:CDY46317	ProteinID:CDY46317.1	SEG:seg	UniParc:UPI0004EECDF5	UniProt:A0A078I891
MapMan:35.1	:	:	:	:	:

Description

BnaC01g31510DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:A0A078I891]

Coordinates

chrLK032661:-:12918..15207

Molecular Weight (calculated)

58184.6 Da

IEP (calculated)

7.171

GRAVY (calculated)

-0.441

Length

525 amino acids

Sequence
(BLAST)

001: MGSVSDPGEL TELAQPSFEE FQKQTSLMTS CTLLWKELSD HFTTLEENLM KKSEALKEMI GALDSQTQSS LESLKRREAT IERSVEIRAR AALESLEKAR
101: DGGDNGGGEV DDEEGLLSAL KSLCLKMDAR GFWSFVTARK KELEGLRSQI PAALVDCVDP AMLVLEAISE VFPVDKRGSG EKMTNDFGWA CVVILESLAP
201: VMVDPVIGKT RLLVTPSVKE KAKEIAETWK ASLEERGRVE NVKTPDVHTF LQHLVTFGIV KSEDLGLYRK LVVGSAWRKQ MPKLAVLVGL GDQMPDMIEE
301: LISRGQQLDA VHFTYEVGLV DKFPPVPLLK AYLRDAKKTV AEDSSNTGRA SHLVARKEQS ALKAVLKCIE EYKLEEEFPP ENLKKRLEQL EKTKTEKRKP
401: AAVPANKRTR ASYNGPMPPA KAGRITNAYV SSFPFIRSPS HSPQYASPAA AYPSPPTTVY SNRSPPYPYS PELIPASYQA SPIGYPAYNG YCNGPVPAPA
501: PAPPVYHPHY PQQHHQHAHH QQAYY

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.