CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69452
CDX71688
CDY05835
CDY32645
CDY33404
CDY35602
CDY38847
CDY42958
CDY55572
CDY64735
CDY67200

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	CDY33404	AT2G06005.1	19429606
AT4G00650.1	CDY64735	AT2G06005.1	19429606
AT4G00650.1	CDX71688	AT4G00650.1	17138694
AT4G00650.1	CDY05835	AT4G00650.1	17138694
AT4G00650.1	CDY32645	AT4G00650.1	17138694
AT4G00650.1	CDY38847	AT4G00650.1	17138694
AT4G00650.1	CDX71688	AT4G00650.1	19429606
AT4G00650.1	CDY05835	AT4G00650.1	19429606
AT4G00650.1	CDY32645	AT4G00650.1	19429606
AT4G00650.1	CDY38847	AT4G00650.1	19429606
AT4G00650.1	CDY35602	AT4G17060.1	19429606
AT4G00650.1	CDY42958	AT4G17060.1	19429606
AT4G00650.1	CDX69452	AT5G16320.1	19429606
AT4G00650.1	CDY55572	AT5G16320.1	19429606
AT4G00650.1	CDY67200	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38847	Canola	nucleus, plastid	91.25	89.26
CDX71688	Canola	nucleus	72.04	71.79
CDY05835	Canola	cytosol, nucleus, plastid	42.71	69.36
AT4G00650.1	Thale cress	plastid	27.1	50.32
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	18.87	37.8
KRH54046	Soybean	nucleus	32.42	31.93
KRH63904	Soybean	nucleus	32.76	31.78
Solyc03g117910.2.1	Tomato	plastid	16.12	27.25
Solyc03g117930.2.1	Tomato	nucleus	27.44	27.21
PGSC0003DMT400037427	Potato	nucleus, plastid	24.87	26.22
Solyc12g042440.1.1	Tomato	nucleus, plastid	24.01	25.59
VIT_19s0014g00060.t01	Wine grape	nucleus	13.21	24.29
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	22.81	23.25
PGSC0003DMT400084922	Potato	cytosol	15.61	22.98
CDY19713	Canola	cytosol	11.32	21.71
PGSC0003DMT400080001	Potato	nucleus	26.24	21.37
Solyc04g072200.1.1	Tomato	cytosol	25.9	21.0
PGSC0003DMT400080000	Potato	nucleus	27.1	20.98
CDX99994	Canola	peroxisome	12.01	20.96
CDY55572	Canola	nucleus	12.86	20.95
Solyc03g117920.1.1	Tomato	nucleus	12.69	20.73
Os03t0851400-01	Rice	extracellular	15.09	20.09
PGSC0003DMT400094724	Potato	nucleus	26.59	19.87
CDY12290	Canola	cytosol	14.92	19.55
CDY05684	Canola	cytosol	17.15	19.34
EER93089	Sorghum	plastid	15.27	19.26
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	7.03	19.25
CDY48750	Canola	cytosol	16.98	18.79
CDY00066	Canola	cytosol	16.98	18.54
CDY67951	Canola	cytosol	14.07	17.79
CDX69452	Canola	cytosol	13.55	17.52
CDX99996	Canola	extracellular	4.8	17.39
CDY67200	Canola	cytosol, nucleus	4.12	17.14
CDY34252	Canola	cytosol, nucleus, plastid	14.92	16.67
TraesCS4A01G329000.1	Wheat	plastid	14.07	16.57
CDY46317	Canola	cytosol, nucleus, plastid	14.75	16.38
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	14.92	16.35
TraesCS5B01G543400.1	Wheat	plastid	13.89	15.55
CDY38318	Canola	nucleus	13.55	14.88
TraesCS5D01G544800.1	Wheat	mitochondrion	14.24	14.79
CDX86173	Canola	cytosol	15.95	10.76
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	15.61	10.2
CDX86307	Canola	nucleus	16.47	6.43
CDX85335	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	17.15	6.18
CDY19712	Canola	cytosol, nucleus, peroxisome	2.74	3.34
CDX99995	Canola	cytosol, nucleus, peroxisome	2.57	3.13

Protein Annotations

EnsemblPlants:CDY32645	EnsemblPlantsGene:GSBRNA2T00052682001	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF3	PFAM:PF07899	ProteinID:AFA43307.1	ProteinID:CDY32645	ProteinID:CDY32645.1	UniParc:UPI00024FB1B2
UniProt:H6VVI9	MapMan:35.1	:	:	:	:

Description

BnaC03g16130DFRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:H6VVI9]

Coordinates

chrLK032297:-:408306..410517

Molecular Weight (calculated)

65130.1 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.484

Length

583 amino acids

Sequence
(BLAST)

001: MAVRNGYAHR PSTREEEQPS SAMIRRREAQ ATVETTIEQS NDPQFLKSIV DLTALAAAVN AFKRRYDELQ SHMDYIENAI DSNLKTNGII EIAAASPPSP
101: NKTATAIACQ SPPKEKSEAE RLCESMCSKE LRRYMFVNIS ERAKLIEELP GALKLAKDPA KFVLDCIGKF YLQGRKAFAN DSPAITARKV SLLVLECYLL
201: TFDPEGEKKQ VGSSVKDEAE AAAVAWKKRL VGEGWLGAAE AVDARGLLLL VACFGIPESF KSMDLLDLIR QSGTAEIVGA LKRSPFLVPM MSGIVDSSIK
301: RGMHIEALEM VYTFGMEDRF SPSSILTSFL RMSKESFERA KRKAQAPMAS KTANEKQLDA LSSVMKCLEA HKLDPAKEVP GWQIQEQMAK LEKEIVQLDK
401: QMEEARSISR MEEARSISRM EEAAISQRLY NQQMKRPRLS EREMPPTASL SYSPMYRDQS FPSHREGDAD EISALVSSYL GPSAGFPHRS SLRRSPEYMV
501: PPGGLGRSVS AYDHQPPTSY SPVSRRYSPV HGQRLPQEYS LPVHGQHQMP YGLYRHSPSV ERYLALSNHR TPRNLSQDRI GGM

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.