Factsheet for TraesCS5B01G543400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G216300.1
TraesCS1B01G229500.1
TraesCS1D01G218500.1
TraesCS4A01G329000.1
TraesCS5B01G543400.1
TraesCS5D01G544800.1
TraesCS6A01G336900.1
TraesCS6B01G367400.1
TraesCS6D01G317300.1
TraesCS7A01G163400.1
TraesCS7B01G069200.1
TraesCS7D01G165500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	TraesCS6A01G336900.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS6B01G367400.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS6D01G317300.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7A01G163400.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7B01G069200.1	AT2G06005.1	19429606
AT4G00650.1	TraesCS7D01G165500.3	AT2G06005.1	19429606
AT4G00650.1	TraesCS4A01G329000.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS5B01G543400.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS5D01G544800.1	AT4G00650.1	17138694
AT4G00650.1	TraesCS4A01G329000.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS5B01G543400.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS5D01G544800.1	AT4G00650.1	19429606
AT4G00650.1	TraesCS1A01G216300.1	AT4G17060.1	19429606
AT4G00650.1	TraesCS1B01G229500.1	AT4G17060.1	19429606
AT4G00650.1	TraesCS1D01G218500.1	AT4G17060.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G329000.1	Wheat	plastid	84.84	89.29
TraesCS5D01G544800.1	Wheat	mitochondrion	90.21	83.78
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	76.01	74.44
Os03t0851400-01	Rice	extracellular	38.77	46.12
EER93089	Sorghum	plastid	40.5	45.67
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	15.93	28.52
Solyc03g117910.2.1	Tomato	plastid	14.01	21.16
AT4G00650.1	Thale cress	plastid	12.09	20.06
CDY05835	Canola	cytosol, nucleus, plastid	13.63	19.78
Bra035723.1-P	Field mustard	plastid	13.63	19.4
PGSC0003DMT400084922	Potato	cytosol	14.2	18.69
KRH63904	Soybean	nucleus	17.66	15.31
KRH54046	Soybean	nucleus	16.89	14.86
TraesCS5B01G164900.2	Wheat	cytosol	15.36	14.44
Solyc03g117930.2.1	Tomato	nucleus	15.93	14.12
CDX71688	Canola	nucleus	15.74	14.02
CDY32645	Canola	nucleus	15.55	13.89
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	13.24	13.86
Solyc12g042440.1.1	Tomato	nucleus, plastid	14.4	13.71
Bra029192.1-P	Field mustard	nucleus, plastid	15.16	13.46
CDY38847	Canola	nucleus, plastid	15.36	13.42
TraesCS5B01G437500.2	Wheat	cytosol	14.2	13.33
PGSC0003DMT400037427	Potato	nucleus, plastid	13.63	12.84
TraesCS1B01G432600.1	Wheat	nucleus	14.59	12.03
PGSC0003DMT400080000	Potato	nucleus	17.27	11.95
PGSC0003DMT400080001	Potato	nucleus	15.16	11.03
PGSC0003DMT400094724	Potato	nucleus	16.31	10.9
Solyc04g072200.1.1	Tomato	cytosol	14.78	10.71
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	11.52	10.49
TraesCS3B01G136400.1	Wheat	cytosol, nucleus, plastid	12.86	10.18
VIT_19s0014g00060.t01	Wine grape	nucleus	4.22	6.94
Solyc03g117920.1.1	Tomato	nucleus	2.69	3.92

Protein Annotations

EnsemblPlants:TraesCS5B01G543400.1	EnsemblPlantsGene:TraesCS5B01G543400	InterPro:Frigida	PANTHER:PTHR31791	PANTHER:PTHR31791:SF28	PFAM:PF07899
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:696425039..696427496

Molecular Weight (calculated)

56601.3 Da

IEP (calculated)

4.910

GRAVY (calculated)

-0.341

Length

521 amino acids

Sequence
(BLAST)

001: MSSPPPPPPP PPAVPPTSAA AAYASLADIA STVEGLACFN DVLVEFLDEW REFHLDANSI AAALPPLADD DDPKPSPVGQ LGALLGQWNP VLPAAAASPL
101: ADRVADESNP RLPDPVADRR ERSPVPETGE DPLPQRHESS PKPDPVLERR EHSPLPAPQP RTSASAPAAA AAAGFPVADP VPEPEPKPVL PAEVGPVRAP
201: KPAPKPAPGR ERRAGEQEAE ALGGICEQMG SRSLRGFVAA HLRDRAWLRR VGPAALRRAP DPAVLVIRAV SRSYICAENE NAETACVLLL ELYVRAGCPR
301: RPEGEGDAEV RAEARVSALS WRSRIVREKG RVADATARDA RGLVLLMAAF GAPAEFPLQE LYQLLLAGGC FTCVDVLRCS QPFMKKLRDV VADMLNRGSY
401: REAIGVILAF DLQEAFPLDG VLSYIVDKVV RNRKEQESEV ECDLAGSKKR DEEELILWRS ISRYVQERKP SFSEMSCPSF AERIKLLEER VGKPNQAFLS
501: EESREPSFSE RSEPNQAFLM I

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.