Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G172300.2 | Wheat | cytosol | 97.83 | 97.83 |
| TraesCS5A01G168100.1 | Wheat | cytosol | 95.13 | 97.77 |
| HORVU5Hr1G051330.1 | Barley | cytosol | 94.95 | 97.59 |
| EES02294 | Sorghum | nucleus | 79.42 | 82.09 |
| Zm00001d019890_P001 | Maize | nucleus | 77.62 | 80.52 |
| Zm00001d005107_P001 | Maize | cytosol | 77.62 | 80.52 |
| Zm00001d019892_P001 | Maize | nucleus | 58.66 | 80.25 |
| Os09t0248200-01 | Rice | cytosol | 76.9 | 78.17 |
| Os09t0248300-01 | Rice | cytosol | 76.35 | 78.04 |
| GSMUA_Achr2P05710_001 | Banana | nucleus | 24.91 | 71.13 |
| GSMUA_Achr8P29000_001 | Banana | nucleus | 62.82 | 64.44 |
| GSMUA_Achr3P16830_001 | Banana | endoplasmic reticulum, golgi | 64.44 | 60.71 |
| GSMUA_Achr9P08130_001 | Banana | cytosol | 59.03 | 60.56 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 56.32 | 55.42 |
| KRH66282 | Soybean | cytosol | 54.15 | 54.95 |
| KRH07289 | Soybean | cytosol | 53.79 | 54.58 |
| CDY00062 | Canola | cytosol, mitochondrion, nucleus, plastid | 20.76 | 53.99 |
| Bra020704.1-P | Field mustard | cytosol | 50.54 | 53.95 |
| CDY48750 | Canola | cytosol | 51.26 | 53.89 |
| CDY05684 | Canola | cytosol | 50.18 | 53.77 |
| KRH66280 | Soybean | cytosol | 52.71 | 53.68 |
| PGSC0003DMT400071153 | Potato | nucleus | 52.71 | 53.58 |
| PGSC0003DMT400053214 | Potato | cytosol | 52.53 | 53.3 |
| Solyc06g082930.2.1 | Tomato | nucleus | 51.44 | 53.27 |
| Bra036176.1-P | Field mustard | cytosol | 49.82 | 53.08 |
| Solyc06g007640.2.1 | Tomato | nucleus | 51.26 | 52.99 |
| CDY00066 | Canola | cytosol | 50.54 | 52.43 |
| Bra037489.1-P | Field mustard | cytosol | 50.72 | 51.37 |
| AT5G48385.1 | Thale cress | cytosol | 51.44 | 51.08 |
| TraesCS1B01G432600.1 | Wheat | nucleus | 33.75 | 29.59 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 25.45 | 25.41 |
| TraesCS4B01G266000.1 | Wheat | cytosol, nucleus, plasma membrane | 17.51 | 19.48 |
| CDX86307 | Canola | nucleus | 50.54 | 18.75 |
| TraesCS3B01G136400.1 | Wheat | cytosol, nucleus, plastid | 21.12 | 17.78 |
| CDX85335 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 51.44 | 17.63 |
| TraesCS5B01G543400.1 | Wheat | plastid | 14.44 | 15.36 |
| Bra037488.1-P | Field mustard | cytosol | 0.18 | 0.11 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G164900.2 | EnsemblPlantsGene:TraesCS5B01G164900 | InterPro:Frigida | ncoils:Coil | PANTHER:PTHR31791 | PANTHER:PTHR31791:SF12 |
| PFAM:PF07899 | SEG:seg | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:304819503..304823258
Molecular Weight (calculated)
62524.1 Da
IEP (calculated)
7.585
GRAVY (calculated)
-0.479
Length
554 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTDCLVGPY AESVAMSDME SVATLMESTS LKIQQLQRAF AELESQSAVT MNFKWKQLED HFRGLEQSLK KKFDELKKQE KEFQETVAKS EKMLEQQEAV
101: VVAKELTSLE RLQEKRDAAL AMIFGKSKLS LNTNYITPMN KPQSNYTVGT LDVKWPKHSS EGNARMQDGN AAVKPRSELA TLCEEMNVKG LHKFISDNRK
201: NLTSIREEIP SALKGASQPY VLVLDSLEDF YSGENLVLDG KKDGDLLGVR RTCLMLMESL VQLQADDITG LLSEGQMFAT NVKDRAKKIA FEWKSKLDSL
301: DIDASNGNCL EAHAFLQLLA TFGIFSEFNE DELCKLLPSV SRRRQTPELC RLLGLSQKMP GVIGVLVDSA RPIDAINLAY AFGLTEQFEP VQLLKAYLRE
401: VKKVSHAKNG KMSPGAQNEM NERELSALKA VIKCIEEHKL EEQYPVDPLQ KRVIQLEKAK VDKRRAVEAA KPQSKRPRAN GSLYAPRVSS FPEKSFYQAT
501: PERHPYPYER QFVYGAEAHH HPTMMNAAPY TISPAHTPYY GNGYPVQYQI PYIH
101: VVAKELTSLE RLQEKRDAAL AMIFGKSKLS LNTNYITPMN KPQSNYTVGT LDVKWPKHSS EGNARMQDGN AAVKPRSELA TLCEEMNVKG LHKFISDNRK
201: NLTSIREEIP SALKGASQPY VLVLDSLEDF YSGENLVLDG KKDGDLLGVR RTCLMLMESL VQLQADDITG LLSEGQMFAT NVKDRAKKIA FEWKSKLDSL
301: DIDASNGNCL EAHAFLQLLA TFGIFSEFNE DELCKLLPSV SRRRQTPELC RLLGLSQKMP GVIGVLVDSA RPIDAINLAY AFGLTEQFEP VQLLKAYLRE
401: VKKVSHAKNG KMSPGAQNEM NERELSALKA VIKCIEEHKL EEQYPVDPLQ KRVIQLEKAK VDKRRAVEAA KPQSKRPRAN GSLYAPRVSS FPEKSFYQAT
501: PERHPYPYER QFVYGAEAHH HPTMMNAAPY TISPAHTPYY GNGYPVQYQI PYIH
001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH
Arabidopsis Description
FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.