Factsheet for Bra036176.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016654.1-P
Bra021524.1-P
Bra023825.1-P
Bra026120.1-P
Bra026756.1-P
Bra027380.1-P
Bra033264.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48385.1	Bra033264.1-P	AT1G01440.1	21798944
AT5G48385.1	Bra016654.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra026120.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra026756.1-P	AT1G15570.1	21798944
AT5G48385.1	Bra021524.1-P	AT3G13990.1	21798944
AT5G48385.1	Bra027380.1-P	AT3G13990.1	21798944
AT5G48385.1	Bra023825.1-P	AT3G22440.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00062	Canola	cytosol, mitochondrion, nucleus, plastid	38.08	92.96
CDY00066	Canola	cytosol	94.23	91.76
Bra020704.1-P	Field mustard	cytosol	83.46	83.62
Bra037489.1-P	Field mustard	cytosol	86.15	81.9
AT5G48385.1	Thale cress	cytosol	84.04	78.32
KRH66282	Soybean	cytosol	61.73	58.79
PGSC0003DMT400071153	Potato	nucleus	61.35	58.53
KRH66280	Soybean	cytosol	61.15	58.46
KRH07289	Soybean	cytosol	61.15	58.24
Solyc06g082930.2.1	Tomato	nucleus	59.42	57.76
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	61.92	57.19
PGSC0003DMT400053214	Potato	cytosol	60.0	57.14
Solyc06g007640.2.1	Tomato	nucleus	58.46	56.72
GSMUA_Achr2P05710_001	Banana	nucleus	19.23	51.55
GSMUA_Achr8P29000_001	Banana	nucleus	53.46	51.48
TraesCS5A01G168100.1	Wheat	cytosol	53.08	51.21
HORVU5Hr1G051330.1	Barley	cytosol	52.88	51.02
Zm00001d019892_P001	Maize	nucleus	39.42	50.62
GSMUA_Achr9P08130_001	Banana	cytosol	52.12	50.19
TraesCS5D01G172300.2	Wheat	cytosol	53.46	50.18
EES02294	Sorghum	nucleus	51.54	50.0
Zm00001d019890_P001	Maize	nucleus	51.35	50.0
TraesCS5B01G164900.2	Wheat	cytosol	53.08	49.82
Zm00001d005107_P001	Maize	cytosol	50.77	49.44
Os09t0248300-01	Rice	cytosol	50.0	47.97
Os09t0248200-01	Rice	cytosol	49.42	47.16
GSMUA_Achr3P16830_001	Banana	endoplasmic reticulum, golgi	53.08	46.94
Bra023207.1-P	Field mustard	cytosol	23.85	26.9
Bra008624.1-P	Field mustard	cytosol	22.88	26.39
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	26.15	25.47
Bra035723.1-P	Field mustard	plastid	13.27	18.85
Bra029192.1-P	Field mustard	nucleus, plastid	18.65	16.52
Bra036105.1-P	Field mustard	nucleus	19.42	12.11
Bra009973.1-P	Field mustard	cytosol	19.62	11.74
Bra037488.1-P	Field mustard	cytosol	0.38	0.21

Protein Annotations

EnsemblPlants:Bra036176.1	EnsemblPlants:Bra036176.1-P	EnsemblPlantsGene:Bra036176	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150
GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil
PANTHER:PTHR31791	PANTHER:PTHR31791:SF12	PFAM:PF07899	SEG:seg	UniParc:UPI0002541EB0	UniProt:M4F522
MapMan:35.1	:	:	:	:	:

Description

AT5G48385 (E=2e-108) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).

Coordinates

chrA09:+:2319064..2321080

Molecular Weight (calculated)

58392.8 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.558

Length

520 amino acids

Sequence
(BLAST)

001: MLEDTRSVAS LMDSTSSKIQ QLQKAFAELE SQRAVTLNLK WKELEEHFHG LERSLKRRFH ELEDQEKEYE TKTRKAQELL EKKKAAVEAK EKASLERLQK
101: KRDSAVFAIN SALDKYNKAP IADGSITDGT VQEEAEISPQ VKAYPELLKL CKDMDSTGLH KFVSNNRKNL ASLKEEIPLA FKAASNPATL VLDSLEGFYP
201: IESSPPPSDG KKDANLLGMR RTCIMLMECL SILLSRLDGS SLAGVLSENV KRRAKTIAEG WNPLPESTLD MDACNGNSLE AHAFLQLLAS FAIVKDFEED
301: ELLKLIPMVS RRRQAAELCR SLGLSEKMPG VIEVVLNSGR HIDAVNLAFA FELTKQFPPV ELLKSYLTEA KRSSSQDEFN ERELTGVKAV VKCVEVHNLE
401: EHYPVEPLQK RILELEKTKA EKKKATEPAK PQTKRPRGAQ PRVTDNNNNK TGYGRVIIPE RYPQYVYDNR PFLTGPIMAA QAHPPPPPPQ TYTFSPAAAA
501: HGNFYGNCYQ YQAPPPPYFH

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.