Factsheet for Bra035723.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra008624.1-P
Bra015180.1-P
Bra029192.1-P
Bra035723.1-P
Bra040110.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	Bra015180.1-P	AT2G06005.1	19429606
AT4G00650.1	Bra029192.1-P	AT4G00650.1	17138694
AT4G00650.1	Bra035723.1-P	AT4G00650.1	17138694
AT4G00650.1	Bra029192.1-P	AT4G00650.1	19429606
AT4G00650.1	Bra035723.1-P	AT4G00650.1	19429606
AT4G00650.1	Bra040110.1-P	AT4G17060.1	19429606
AT4G00650.1	Bra008624.1-P	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05835	Canola	cytosol, nucleus, plastid	98.09	100.0
AT4G00650.1	Thale cress	plastid	47.81	55.73
Bra029192.1-P	Field mustard	nucleus, plastid	69.67	43.44
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	31.42	39.52
Solyc03g117910.2.1	Tomato	plastid	24.59	26.09
PGSC0003DMT400084922	Potato	cytosol	26.78	24.75
KRH54046	Soybean	nucleus	34.43	21.28
KRH63904	Soybean	nucleus	34.15	20.8
Solyc03g117930.2.1	Tomato	nucleus	33.33	20.75
Solyc12g042440.1.1	Tomato	nucleus, plastid	25.96	17.37
PGSC0003DMT400037427	Potato	nucleus, plastid	26.23	17.36
Os03t0851400-01	Rice	extracellular	20.77	17.35
EER93089	Sorghum	plastid	20.22	16.02
PGSC0003DMT400080001	Potato	nucleus	29.78	15.22
PGSC0003DMT400080000	Potato	nucleus	30.6	14.87
TraesCS4A01G329000.1	Wheat	plastid	19.95	14.75
Solyc04g072200.1.1	Tomato	cytosol	28.96	14.74
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	20.77	14.29
Bra008624.1-P	Field mustard	cytosol	17.49	14.19
Bra023207.1-P	Field mustard	cytosol	17.76	14.1
Bra020704.1-P	Field mustard	cytosol	19.95	14.07
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	21.58	13.81
TraesCS5B01G543400.1	Wheat	plastid	19.4	13.63
Bra036176.1-P	Field mustard	cytosol	18.85	13.27
TraesCS5D01G544800.1	Wheat	mitochondrion	20.22	13.19
PGSC0003DMT400094724	Potato	nucleus	27.87	13.08
Bra037489.1-P	Field mustard	cytosol	19.4	12.98
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	17.21	11.8
Bra036105.1-P	Field mustard	nucleus	17.76	7.79
Bra009973.1-P	Field mustard	cytosol	16.94	7.13
VIT_19s0014g00060.t01	Wine grape	nucleus	5.19	5.99
Solyc03g117920.1.1	Tomato	nucleus	5.46	5.6
Bra037488.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

EMBL:JN015482	EnsemblPlants:Bra035723.1	EnsemblPlants:Bra035723.1-P	EnsemblPlantsGene:Bra035723	GO:GO:0000003	GO:GO:0007275
GO:GO:0008150	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida
PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	PFAM:PF07899	ProteinID:AEJ81951	ProteinID:AEJ81951.1	SEG:seg
UniParc:UPI00022A6A4E	UniProt:G3JVY1	MapMan:35.1	:	:	:

Description

AT4G00650 (E=4e-070) FRI, FLA | FRI (FRIGIDA); protein heterodimerization/ protein homodimerization

Coordinates

chrA04:-:12526695..12528015

Molecular Weight (calculated)

40368.6 Da

IEP (calculated)

8.759

GRAVY (calculated)

-0.218

Length

366 amino acids

Sequence
(BLAST)

001: MAFRNGSLIP AHDPSTRENQ SSSPTIQRGT VPTNTEITIE QSNHPQFLKS IDDLTAFSAA VDAFKRHYDD LQSHMDYIKN AIDSSLKSKG ITAESPSSRS
101: QSPRNDASGE TVAATQSPPK ETCETVAEKV ERLCELMCSK GLRRYMYSNI SDRAKLIEEL PAALKLAKEP ANFVLECIGK FYLQGRKAYA SDSHMIPARQ
201: VSLLILESYL LMLDPKKPFD RVSIKDQAEA AAVAWKKRMM SEGRLAAAEA MDARGLLLLI ACFGIPSSFS SMDLFDLVRK SGAAEIAAAL KRSPFLVPMM
301: SGIVDSSIKR GKHIEALGMI YTFGIEDRFS ASSLLTSFLR MSKESFERAK QKAQAPIAFA CPFFTH

Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)

001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV

Arabidopsis Description

FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.