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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • cytosol 1
  • mitochondrion 1
  • extracellular 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, extracellular, peroxisome, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:extracellular
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G216300.1
TraesCS1B01G229500.1
TraesCS1D01G218500.1
TraesCS4A01G329000.1
TraesCS5B01G543400.1
TraesCS5D01G544800.1
TraesCS6A01G336900.1
TraesCS6B01G367400.1
TraesCS6D01G317300.1
TraesCS7A01G163400.1
TraesCS7B01G069200.1
TraesCS7D01G165500.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G00650.1 TraesCS6A01G336900.1 AT2G06005.1 19429606
AT4G00650.1 TraesCS6B01G367400.1 AT2G06005.1 19429606
AT4G00650.1 TraesCS6D01G317300.1 AT2G06005.1 19429606
AT4G00650.1 TraesCS7A01G163400.1 AT2G06005.1 19429606
AT4G00650.1 TraesCS7B01G069200.1 AT2G06005.1 19429606
AT4G00650.1 TraesCS7D01G165500.3 AT2G06005.1 19429606
AT4G00650.1 TraesCS4A01G329000.1 AT4G00650.1 17138694
AT4G00650.1 TraesCS5B01G543400.1 AT4G00650.1 17138694
AT4G00650.1 TraesCS5D01G544800.1 AT4G00650.1 17138694
AT4G00650.1 TraesCS4A01G329000.1 AT4G00650.1 19429606
AT4G00650.1 TraesCS5B01G543400.1 AT4G00650.1 19429606
AT4G00650.1 TraesCS5D01G544800.1 AT4G00650.1 19429606
AT4G00650.1 TraesCS1A01G216300.1 AT4G17060.1 19429606
AT4G00650.1 TraesCS1B01G229500.1 AT4G17060.1 19429606
AT4G00650.1 TraesCS1D01G218500.1 AT4G17060.1 19429606
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5B01G543400.1 Wheat plastid 89.29 84.84
TraesCS5D01G544800.1 Wheat mitochondrion 93.74 82.71
HORVU5Hr1G122680.1 Barley mitochondrion, peroxisome, plastid 78.38 72.93
Os03t0851400-01 Rice extracellular 40.0 45.21
EER93089 Sorghum plastid 42.02 45.02
VIT_19s0014g00030.t01 Wine grape cytosol, golgi, nucleus 16.77 28.52
Solyc03g117910.2.1 Tomato plastid 14.34 20.58
AT4G00650.1 Thale cress plastid 12.93 20.38
CDY05835 Canola cytosol, nucleus, plastid 14.75 20.33
Bra035723.1-P Field mustard plastid 14.75 19.95
PGSC0003DMT400084922 Potato cytosol 14.34 17.93
KRH63904 Soybean nucleus 19.19 15.81
KRH54046 Soybean nucleus 18.59 15.54
TraesCS5A01G168100.1 Wheat cytosol 15.76 14.47
CDX71688 Canola nucleus 16.97 14.36
TraesCS5A01G434500.1 Wheat cytosol 15.96 14.26
CDY32645 Canola nucleus 16.57 14.07
Bra029192.1-P Field mustard nucleus, plastid 16.36 13.8
Solyc03g117930.2.1 Tomato nucleus 16.36 13.78
CDY38847 Canola nucleus, plastid 16.57 13.76
Solyc12g042440.1.1 Tomato nucleus, plastid 15.15 13.71
TraesCS4A01G039500.1 Wheat cytosol, nucleus, plasma membrane, plastid 13.94 13.48
PGSC0003DMT400037427 Potato nucleus, plastid 14.55 13.02
TraesCS1A01G403200.1 Wheat nucleus 15.96 12.52
PGSC0003DMT400080000 Potato nucleus 17.37 11.42
Solyc06g074450.1.1 Tomato cytosol, mitochondrion, nucleus, peroxisome 12.73 11.01
PGSC0003DMT400094724 Potato nucleus 17.17 10.9
PGSC0003DMT400080001 Potato nucleus 15.35 10.61
Solyc04g072200.1.1 Tomato cytosol 15.35 10.57
TraesCS3A01G117300.1 Wheat cytosol, nucleus, plastid 13.74 10.4
VIT_19s0014g00060.t01 Wine grape nucleus 4.24 6.62
Solyc03g117920.1.1 Tomato nucleus 2.83 3.92
Protein Annotations
EnsemblPlants:TraesCS4A01G329000.1EnsemblPlantsGene:TraesCS4A01G329000InterPro:FrigidaPANTHER:PTHR31791PANTHER:PTHR31791:SF28PFAM:PF07899
SEG:segMapMan:35.2::::
Description
No Description!
Coordinates
chr4A:-:614244840..614247194
Molecular Weight (calculated)
53834.4 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.298
Length
495 amino acids
Sequence
(BLAST)
001: MLPPPPPPPP PAVPPTSAAA AYASLAAIAS SVEGLASFNE VLVEFLDEWR EFHLDANSIA AALPPLADDD ADPDPKPSPV GELGALLGHW NPVLPAAAAA
101: APPLADRVAD ESNPRLPDPV AERRQHSPVP QDPLHQRDES IPKPGPVIER REHSPLPAPQ RLTSAPAVPA AAADPVPEPE PKPALPAEVG PVRAPKPAPK
201: PGPGRERRAS EQEAEMLGGI CEQMGSRSLR GFVTTHLRDR AWLRRVGPAA LRRAPDPAVL VIRAVSRSYI CAESENAETA CVLLLELYVR AGCPRRPEGE
301: GEAEVRAEAR VSALSWRSRI VREKGRVADA SARDARGLIL LMAAFGVPLE FPLQELYQLM LAGGCLTWVD VLRCSQPFMK KLRDVVADML NRGSYREAIG
401: VILAFDLQEA FPLDGVLSYI VDKVVRNRKE QESEVECDLA GSKKRDEEEL LLWRSISKYV EERTPCFSEM SCPSLAERIK VLEERVGKPN QNLSE
Best Arabidopsis Sequence Match ( AT4G00650.1 )
(BLAST)
001: MSNYPPTVAA QPTTTANPLL QRHQSEQRRR ELPKIVETES TSMDITIGQS KQPQFLKSID ELAAFSVAVE TFKRQFDDLQ KHIESIENAI DSKLESNGVV
101: LAARNNNFHQ PMLSPPRNNV SVETTVTVSQ PSQEIVPETS NKPEGERICE LMCSKGLRKY IYANISDQAK LMEEIPSALK LAKEPAKFVL DCIGKFYLQG
201: RRAFTKESPM SSARQVSLLI LESFLLMPDR GKGKVKIESW IKDEAETAAV AWRKRLMTEG GLAAAEKMDA RGLLLLVACF GVPSNFRSTD LLDLIRMSGS
301: NEIAGALKRS QFQV
Arabidopsis Description
FRIInactive protein FRIGIDA [Source:UniProtKB/Swiss-Prot;Acc:Q67Z93]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.