Factsheet for TraesCS6A01G336900.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G329000.1
TraesCS5B01G543400.1
TraesCS5D01G544800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	TraesCS4A01G329000.1	AT4G00650.1	19429606
AT2G06005.1	TraesCS5B01G543400.1	AT4G00650.1	19429606
AT2G06005.1	TraesCS5D01G544800.1	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G367400.1	Wheat	plasma membrane	98.58	98.3
TraesCS6D01G317300.1	Wheat	plasma membrane	96.88	96.06
EES05887	Sorghum	peroxisome	83.52	83.05
Os02t0778300-01	Rice	plasma membrane	82.39	81.46
HORVU6Hr1G081380.8	Barley	plasma membrane	87.5	78.97
Zm00001d018275_P001	Maize	peroxisome	82.67	76.78
TraesCS7A01G163400.1	Wheat	plasma membrane	72.16	69.02
GSMUA_Achr8P22670_001	Banana	plasma membrane	31.82	65.88
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	65.34	64.61
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	64.49	63.76
VIT_11s0016g01110.t01	Wine grape	plasma membrane	61.65	61.47
Solyc12g009100.1.1	Tomato	plasma membrane	60.23	60.92
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	60.51	60.0
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	58.52	59.2
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	57.95	58.45
CDY51843	Canola	cytosol, peroxisome, plasma membrane	57.67	58.17
CDX70932	Canola	cytosol, mitochondrion, peroxisome	57.67	58.17
PGSC0003DMT400048982	Potato	cytosol	9.66	57.63
Bra015180.1-P	Field mustard	plasma membrane	59.66	57.07
CDY64735	Canola	cytosol, nucleus, plasma membrane	59.09	38.45
CDY33404	Canola	plasma membrane	59.09	38.45
Solyc07g041890.1.1	Tomato	nucleus	21.59	30.16

Protein Annotations

EnsemblPlants:TraesCS6A01G336900.1	EnsemblPlantsGene:TraesCS6A01G336900	InterPro:TMEM192	ncoils:Coil	PANTHER:PTHR31592	PFAM:PF14802
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr6A:+:570939856..570945449

Molecular Weight (calculated)

40208.8 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.085

Length

352 amino acids

Sequence
(BLAST)

001: MPQRGGAAPA APAPEEDALF IDLLHEAPLS GHREPRSIVS GTLYCILLVG YAAVSVSAPW IFLRVPGMIP PLLCSSNVIL LLLTGIFQQY WVHQVRKVRL
101: QGYYDFSQKL KHIARLPFAT IAYGTALMLL IIVWQPFVHI LSISLLLRIT IVVEATCAGC FMSLYIWYIH KYNSLDGRPD ILQSLYSALQ PSTTTLEDRR
201: YYDGRLSDQQ MALLQYQREN IHYLSEEVLR LQECLSKYQR TDVGNTPQVD LVHLLASRDQ ELRALSAEMN QVHSELQLAR GLIDEKDSEI QRIRLSNSQY
301: VEENDRLRAI LGEWSSRAAK LERALEAERL SNIELRKNIA KFRGQLHKEQ HA

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.