CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, peroxisome, plasma membrane
Any Predictor:	peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH54046
KRH63904

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	KRH54046	AT4G00650.1	19429606
AT2G06005.1	KRH63904	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	96.07	96.07
VIT_11s0016g01110.t01	Wine grape	plasma membrane	76.97	77.62
PGSC0003DMT400048982	Potato	cytosol	12.64	76.27
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	71.63	71.83
Solyc12g009100.1.1	Tomato	plasma membrane	68.54	70.11
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	67.98	69.54
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	66.85	68.19
CDX70932	Canola	cytosol, mitochondrion, peroxisome	66.85	68.19
CDY51843	Canola	cytosol, peroxisome, plasma membrane	66.57	67.91
Bra015180.1-P	Field mustard	plasma membrane	69.38	67.12
TraesCS6A01G336900.1	Wheat	plasma membrane	63.76	64.49
Os02t0778300-01	Rice	plasma membrane	64.04	64.04
TraesCS6B01G367400.1	Wheat	plasma membrane	63.48	64.02
TraesCS6D01G317300.1	Wheat	plasma membrane	63.76	63.94
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	64.61	62.5
EES05887	Sorghum	peroxisome	62.08	62.43
TraesCS7D01G165500.3	Wheat	plasma membrane	64.04	61.96
TraesCS7A01G163400.1	Wheat	plasma membrane	64.04	61.96
GSMUA_Achr8P22670_001	Banana	plasma membrane	28.37	59.41
Zm00001d018275_P001	Maize	peroxisome	62.36	58.58
HORVU6Hr1G081380.8	Barley	plasma membrane	62.08	56.67
CDY33404	Canola	plasma membrane	68.82	45.29
CDY64735	Canola	cytosol, nucleus, plasma membrane	68.82	45.29

Protein Annotations

EMBL:ACUP02005455	EnsemblPlants:KRH37493	EnsemblPlantsGene:GLYMA_09G069700	EntrezGene:100795952	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM192	ncoils:Coil	PANTHER:PTHR31592	PFAM:PF14802	ProteinID:KRH37493
ProteinID:KRH37493.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001E2258A	UniProt:A0A0R0IB04	MapMan:35.1

Description

hypothetical protein

Coordinates

chr9:-:7081912..7087501

Molecular Weight (calculated)

40384.8 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.009

Length

356 amino acids

Sequence
(BLAST)

001: MATDRYASPP ATSPEENALF LDILHEAPLF AHRKAARVIG SVFYCILLAG YATLAIGAHW IFRPVQGLIS PVLCSCDVLL LLLTGIFQQY LVYQVQKIRL
101: QGYYSFSQKL KFIVRIPFAI TAYGTAAMLL VIVWKPYTGF LSISAILRII MVVEAVSAVC FMSLYIGYIH QYNSLNSHPD VLKSLYSPLQ PSSSLEGLRY
201: HDGRLSDQQM ALLQYQRENL HFLSEEILRL QECLSKYEGT DDRSTPQVDL AHLLAARDQE LRTLSAEMNQ VQSELRLARS LIAERDSEIQ HVRTTNNQYV
301: EENERLRAIL GEWSTRAAKL ERALEAERMS TLELQRKLST LRSQSYTADE ANELGA

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.