Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra029192.1-P | |
| Bra035723.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G06005.1 | Bra029192.1-P | AT4G00650.1 | 19429606 |
| AT2G06005.1 | Bra035723.1-P | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G06005.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 85.33 | 88.45 |
| VIT_11s0016g01110.t01 | Wine grape | plasma membrane | 69.57 | 72.52 |
| Bra006566.1-P | Field mustard | cytosol, nucleus, peroxisome | 67.39 | 71.06 |
| KRH12539 | Soybean | endoplasmic reticulum, peroxisome, plastid | 67.66 | 69.94 |
| KRH37493 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 67.12 | 69.38 |
| Solyc12g009100.1.1 | Tomato | plasma membrane | 63.86 | 67.53 |
| CDY64735 | Canola | cytosol, nucleus, plasma membrane | 94.84 | 64.51 |
| CDY33404 | Canola | plasma membrane | 94.57 | 64.33 |
| GSMUA_Achr8P22670_001 | Banana | plasma membrane | 28.8 | 62.35 |
| TraesCS6B01G367400.1 | Wheat | plasma membrane | 57.88 | 60.34 |
| Os02t0778300-01 | Rice | plasma membrane | 58.15 | 60.11 |
| TraesCS6A01G336900.1 | Wheat | plasma membrane | 57.07 | 59.66 |
| PGSC0003DMT400048982 | Potato | cytosol | 9.51 | 59.32 |
| TraesCS6D01G317300.1 | Wheat | plasma membrane | 57.07 | 59.15 |
| EES05887 | Sorghum | peroxisome | 55.43 | 57.63 |
| TraesCS7B01G069200.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 57.34 | 57.34 |
| TraesCS7A01G163400.1 | Wheat | plasma membrane | 56.79 | 56.79 |
| TraesCS7D01G165500.3 | Wheat | plasma membrane | 56.79 | 56.79 |
| Zm00001d018275_P001 | Maize | peroxisome | 55.43 | 53.83 |
| HORVU6Hr1G081380.8 | Barley | plasma membrane | 55.16 | 52.05 |
Protein Annotations
| EnsemblPlants:Bra015180.1 | EnsemblPlants:Bra015180.1-P | EnsemblPlantsGene:Bra015180 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:TMEM192 | ncoils:Coil | PANTHER:PTHR31592 | PFAM:PF14802 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002541227 | UniProt:M4DFA8 | MapMan:35.1 | : | : | : |
Description
AT2G06005 (E=9e-112) FIP1 | unknown protein
Coordinates
chrA07:-:2595731..2598360
Molecular Weight (calculated)
42020.6 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.168
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTERRPMTN EENAMFLDIL QEAPLFGHRK SRSLVGSYLY LILLAGYAVL AAGAPWIFHH LHHLTPSLLC CCDVALLILT GIFQQYFVFQ VQKIRLQGYY
101: SFSQKLKHVV RLPFAIASYG ICPTMSVSLD FTGYERTAAM LLVIVWDPQI SILSTSSLQR IIMIAESVCA GFFMSLYIGY VHQYNSVNSR PDVLKSLYSP
201: LQPSSSMDGL RYYEGRLSDQ QTALLQYQRE NLHFLSEEIL SLQEKLSKYE QSDDGSTPQV DLAHLLASRD QELRTLSAEM NQLQSELRLA RSLIAERDAE
301: VQRVNNTNSQ YIEENERLRA ILSEWSMRAA NLERALEVER MSNSELQKEV AGGRRKQQMV ETSEQPPL
101: SFSQKLKHVV RLPFAIASYG ICPTMSVSLD FTGYERTAAM LLVIVWDPQI SILSTSSLQR IIMIAESVCA GFFMSLYIGY VHQYNSVNSR PDVLKSLYSP
201: LQPSSSMDGL RYYEGRLSDQ QTALLQYQRE NLHFLSEEIL SLQEKLSKYE QSDDGSTPQV DLAHLLASRD QELRTLSAEM NQLQSELRLA RSLIAERDAE
301: VQRVNNTNSQ YIEENERLRA ILSEWSMRAA NLERALEVER MSNSELQKEV AGGRRKQQMV ETSEQPPL
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
Arabidopsis Description
FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.