Factsheet for HORVU6Hr1G081380.8

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

peroxisome 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plasma membrane
MultiLoc:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G122680.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	HORVU5Hr1G122680.1	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G367400.1	Wheat	plasma membrane	79.23	87.54
TraesCS6A01G336900.1	Wheat	plasma membrane	78.97	87.5
TraesCS6D01G317300.1	Wheat	plasma membrane	78.46	86.2
EES05887	Sorghum	peroxisome	71.79	79.1
Os02t0778300-01	Rice	plasma membrane	72.05	78.93
Zm00001d018275_P001	Maize	peroxisome	71.28	73.35
GSMUA_Achr8P22670_001	Banana	plasma membrane	28.72	65.88
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	57.44	62.92
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	56.67	62.08
VIT_11s0016g01110.t01	Wine grape	plasma membrane	53.85	59.49
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	53.33	58.59
Solyc12g009100.1.1	Tomato	plasma membrane	52.05	58.33
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	52.05	58.33
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	51.79	57.88
CDY51843	Canola	cytosol, peroxisome, plasma membrane	51.54	57.59
CDX70932	Canola	cytosol, mitochondrion, peroxisome	51.54	57.59
Bra015180.1-P	Field mustard	plasma membrane	52.05	55.16
PGSC0003DMT400048982	Potato	cytosol	7.18	47.46
CDY64735	Canola	cytosol, nucleus, plasma membrane	51.54	37.15
CDY33404	Canola	plasma membrane	51.54	37.15
Solyc07g041890.1.1	Tomato	nucleus	18.46	28.57

Protein Annotations

EnsemblPlants:HORVU6Hr1G081380.8	EnsemblPlantsGene:HORVU6Hr1G081380	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:TMEM192
PFAM:PF14802	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B464760	UniProt:A0A287UX14	MapMan:35.1

Description

No Description!

Coordinates

chrchr6H:+:545735080..545741191

Molecular Weight (calculated)

44553.8 Da

IEP (calculated)

6.746

GRAVY (calculated)

-0.039

Length

390 amino acids

Sequence
(BLAST)

001: MPHDRGGAAS AVPASEEDAL FIDLLHEAPL SGHREPRSIV SGTLYCILLV GYAAVSVSAP WIFLRVPGMI PPLLCSSNVI LLLLTGIFQQ YWVHQVRKVR
101: LQGYYDFSQK LKHIARLPFA TVAYGTALML LIIVWQPYVQ ILSISLLLRI AIVVEATFAG CFMSLYIWYI HKYNSLDGRP DILRSLYSAL QPSTTTLEDR
201: RYYDGRLSDQ QMALLQYQRE NIHYLSEEVL RLQECLSKYQ RTDVGNTPQV DLVHLLASRD QELRALSAEM NQVHSELQLA RGLIDEKDSE IQRIRLSNNQ
301: YVEENDRLRA ILGEWSSRAA KVLWIIEVLL FDLWHFHTLP HHNFLDALNS LNGHWRQSDC QTLNCGRALR NSEANCIRSN TPDSPVLGIE

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.