CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	99.43	99.43
CDY51843	Canola	cytosol, peroxisome, plasma membrane	99.43	99.43
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	92.84	93.1
VIT_11s0016g01110.t01	Wine grape	plasma membrane	70.49	69.69
PGSC0003DMT400048982	Potato	cytosol	11.46	67.8
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	68.19	66.85
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	67.62	66.29
Solyc12g009100.1.1	Tomato	plasma membrane	63.04	63.22
Os02t0778300-01	Rice	plasma membrane	59.6	58.43
TraesCS6A01G336900.1	Wheat	plasma membrane	58.17	57.67
EES05887	Sorghum	peroxisome	58.45	57.63
TraesCS6B01G367400.1	Wheat	plasma membrane	58.17	57.51
GSMUA_Achr8P22670_001	Banana	plasma membrane	27.79	57.06
TraesCS6D01G317300.1	Wheat	plasma membrane	57.88	56.9
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.45	55.43
TraesCS7A01G163400.1	Wheat	plasma membrane	58.17	55.16
TraesCS7D01G165500.3	Wheat	plasma membrane	58.17	55.16
Zm00001d018275_P001	Maize	peroxisome	58.17	53.56
HORVU6Hr1G081380.8	Barley	plasma membrane	57.59	51.54
CDY64735	Canola	cytosol, nucleus, plasma membrane	70.77	45.66
CDY33404	Canola	plasma membrane	70.49	45.47

Protein Annotations

EnsemblPlants:CDX70932	EnsemblPlantsGene:GSBRNA2T00140842001	GO:A0A078C2I2	InterPro:TMEM192	ncoils:Coil	PANTHER:PTHR31592
PFAM:PF14802	ProteinID:CDX70932	ProteinID:CDX70932.1	TMHMM:TMhelix	UniParc:UPI0004EEC365	MapMan:35.1

Description

BnaC03g10160D

Coordinates

chrLK031791:-:2811616..2815028

Molecular Weight (calculated)

39878.3 Da

IEP (calculated)

7.681

GRAVY (calculated)

-0.100

Length

349 amino acids

Sequence
(BLAST)

001: MTNHRRAPSF NPTTEEDNAM FLDILHEAPL FGHRESRSLV GSCIYLLILA SYAVLAAGAP LILQPVQSLI PSLLCSCNVA LLMLTGMFQQ YFVNQVQKIR
101: LQGYYSFSQK LKHVVRLPFA IMAYGTASML LFMVWRPYVS VLPILTVQRF IMSVEAISAA SFMIVFVGYV RQYNSVNSQP DVLNSLYSPL QPAALEGLRY
201: HEAGRLSDQQ MALLQYQREN LHYLSEEILR LQESLSKYEE SNGTSTPQVD LAHLVATRDQ ELRTLSAEVD QLHSELNLAR SLIAERDREI QHVRNTNNQY
301: VAENERLRAI LGEWSMRAAK LERALEVERI TNVELRKKVS GLREQRQMQ

Best Arabidopsis Sequence Match ( AT5G20580.2 )
(BLAST)

001: MANDRRASSV NPSTEQDNAM FLDILHEAPL FGHRESRSLV GSCIYLIILA GYAILAAGAP WILQSVDYLI PSLLCSCNVA LLMLTGMFQQ YFVNQVQKIR
101: LQGYYSFSQK LKHVVRLPFA IMAYGTASML LFMEWRPYVS VLPIFTVQRF IMSVEAISAA SFMIVFVGYV RQYNSVNSQP DVLNSLYSPL QPAALEGLRY
201: HEAGRLSDQQ MALLQYQREN LHYLSEEILR LQESLSKYET NGSSTPQVDL AHLVATRDQE LRTLSAEVDQ LHSELNLARS LISERDREIQ HVRNTNNQYV
301: AENERLRAIL GEWSMRAAKL ERALEVERIS NIELRKKVSA LRDQRQVA

Arabidopsis Description

Putative uncharacterized protein At5g20580 [Source:UniProtKB/TrEMBL;Acc:Q0WP45]
SUBAcon: [peroxisome,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.