Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os03t0851400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G06005.1 | Os03t0851400-01 | AT4G00650.1 | 19429606 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05887 | Sorghum | peroxisome | 83.71 | 84.18 |
| TraesCS6B01G367400.1 | Wheat | plasma membrane | 81.74 | 82.44 |
| TraesCS6A01G336900.1 | Wheat | plasma membrane | 81.46 | 82.39 |
| TraesCS6D01G317300.1 | Wheat | plasma membrane | 81.74 | 81.97 |
| Zm00001d018275_P001 | Maize | peroxisome | 83.43 | 78.36 |
| HORVU6Hr1G081380.8 | Barley | plasma membrane | 78.93 | 72.05 |
| GSMUA_Achr8P22670_001 | Banana | plasma membrane | 31.18 | 65.29 |
| KRH12539 | Soybean | endoplasmic reticulum, peroxisome, plastid | 64.61 | 64.61 |
| PGSC0003DMT400048982 | Potato | cytosol | 10.67 | 64.41 |
| KRH37493 | Soybean | endoplasmic reticulum, peroxisome, plasma membrane | 64.04 | 64.04 |
| VIT_11s0016g01110.t01 | Wine grape | plasma membrane | 62.92 | 63.46 |
| AT5G20580.2 | Thale cress | cytosol, peroxisome, vacuole | 59.83 | 61.21 |
| Solyc12g009100.1.1 | Tomato | plasma membrane | 59.55 | 60.92 |
| AT2G06005.1 | Thale cress | endoplasmic reticulum, peroxisome, plasma membrane | 60.39 | 60.56 |
| Bra006566.1-P | Field mustard | cytosol, nucleus, peroxisome | 58.71 | 59.89 |
| CDY51843 | Canola | cytosol, peroxisome, plasma membrane | 58.43 | 59.6 |
| CDX70932 | Canola | cytosol, mitochondrion, peroxisome | 58.43 | 59.6 |
| Bra015180.1-P | Field mustard | plasma membrane | 60.11 | 58.15 |
| CDY64735 | Canola | cytosol, nucleus, plasma membrane | 59.83 | 39.37 |
| CDY33404 | Canola | plasma membrane | 59.55 | 39.19 |
| Solyc07g041890.1.1 | Tomato | nucleus | 18.82 | 26.59 |
Protein Annotations
| EMBL:AK058466 | EnsemblPlants:Os02t0778300-01 | EnsemblPlantsGene:Os02g0778300 | EntrezGene:4330909 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:TMEM192 | ncoils:Coil | PANTHER:PTHR31592 | PFAM:PF14802 | ProteinID:BAD16976.1 |
| ProteinID:BAD19508.1 | ProteinID:BAF10208.1 | ProteinID:BAS81188.1 | ProteinID:EEE57905.1 | RefSeq:XP_015625890.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000035AD7F | UniProt:Q6ZGC1 | MapMan:35.1 | : | : |
Description
Conserved hypothetical protein. (Os02t0778300-01);Similar to predicted protein. (Os02t0778300-02);Non-protein coding transcript. (Os02t0778300-03)
Coordinates
chr2:+:32945678..32950691
Molecular Weight (calculated)
40289.6 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.060
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHERGGAAS SAAAPATEED ALFIDLLHEA PLSGHREPRS IVGGTLYCIL LAGYAAVAVS APWIFYLVPD MIPPLLCSSN VIILILTGIF QQYWVHQVRK
101: VRLQGYYDFS EKLKRLAQLP FATVASGVAS MLLIIVWQPL VHILSVSLLL RIAIVVEAIC AGCFMSLYLW HIHKYNSLNG HPDILRSLYS ALQLQPSSSL
201: EERRYYDGRF SDQQMALLQY QRENIHYLSE EVLRLQECLS KYQRTDVGST PQADLAHLLA SRDQELRALS AEMNQVHSEL QLARSLIDEK DSEIQRIRVS
301: NNQYIEENDR LRAILGEWSA RAAKLERALE AEQISSIELR KNIAKLRGQT YKDQNT
101: VRLQGYYDFS EKLKRLAQLP FATVASGVAS MLLIIVWQPL VHILSVSLLL RIAIVVEAIC AGCFMSLYLW HIHKYNSLNG HPDILRSLYS ALQLQPSSSL
201: EERRYYDGRF SDQQMALLQY QRENIHYLSE EVLRLQECLS KYQRTDVGST PQADLAHLLA SRDQELRALS AEMNQVHSEL QLARSLIDEK DSEIQRIRVS
301: NNQYIEENDR LRAILGEWSA RAAKLERALE AEQISSIELR KNIAKLRGQT YKDQNT
001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP
Arabidopsis Description
FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.