Factsheet for VIT_11s0016g01110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
nucleus 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0014g00030.t01
VIT_19s0014g00060.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G06005.1	VIT_19s0014g00030.t01	AT4G00650.1	19429606
AT2G06005.1	VIT_19s0014g00060.t01	AT4G00650.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g009100.1.1	Tomato	plasma membrane	76.2	77.3
KRH37493	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	77.62	76.97
KRH12539	Soybean	endoplasmic reticulum, peroxisome, plastid	77.05	76.4
PGSC0003DMT400048982	Potato	cytosol	12.75	76.27
AT2G06005.1	Thale cress	endoplasmic reticulum, peroxisome, plasma membrane	75.92	75.49
CDX70932	Canola	cytosol, mitochondrion, peroxisome	69.69	70.49
Bra006566.1-P	Field mustard	cytosol, nucleus, peroxisome	69.41	70.2
CDY51843	Canola	cytosol, peroxisome, plasma membrane	69.41	70.2
AT5G20580.2	Thale cress	cytosol, peroxisome, vacuole	69.12	70.11
Bra015180.1-P	Field mustard	plasma membrane	72.52	69.57
GSMUA_Achr8P22670_001	Banana	plasma membrane	30.88	64.12
Os02t0778300-01	Rice	plasma membrane	63.46	62.92
TraesCS6B01G367400.1	Wheat	plasma membrane	62.04	62.04
TraesCS6A01G336900.1	Wheat	plasma membrane	61.47	61.65
TraesCS6D01G317300.1	Wheat	plasma membrane	61.47	61.13
EES05887	Sorghum	peroxisome	60.62	60.45
TraesCS7B01G069200.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	62.89	60.33
TraesCS7A01G163400.1	Wheat	plasma membrane	62.61	60.05
TraesCS7D01G165500.3	Wheat	plasma membrane	61.76	59.24
Zm00001d018275_P001	Maize	peroxisome	60.06	55.94
HORVU6Hr1G081380.8	Barley	plasma membrane	59.49	53.85
CDY64735	Canola	cytosol, nucleus, plasma membrane	71.95	46.95
CDY33404	Canola	plasma membrane	71.95	46.95

Protein Annotations

ArrayExpress:VIT_11s0016g01110	EMBL:FN595756	EnsemblPlants:VIT_11s0016g01110.t01	EnsemblPlantsGene:VIT_11s0016g01110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:TMEM192	ncoils:Coil	PANTHER:PTHR31592	PFAM:PF14802	ProteinID:CBI27808
ProteinID:CBI27808.3	SEG:seg	TMHMM:TMhelix	unigene:Vvi.17921	UniParc:UPI0001BE33A4	UniProt:D7TCF0
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:893123..905749

Molecular Weight (calculated)

40109.4 Da

IEP (calculated)

6.942

GRAVY (calculated)

-0.099

Length

353 amino acids

Sequence
(BLAST)

001: MSTERHSSAT STSPEENTLF LDVLHEAPLF GHRKPTSIIG SVFYCFLLAS YAILAVAAPW MFHPIKSLGP SLLCSCDVAF LMITGAFQQY LVYQVQKIRL
101: QGYYMFSQKL KHIVRLPFAT TAYGTAAMLL VMVWKPHISI LSISTILRII MLVEAVCAAS FMSVYIGYVY QYNSLNSQPD VLKSLYSPLQ PSSSLEGLRY
201: YEGGRLSDQQ MALLQYQREN LHFLSEEILR LQECLSKYER SNDGSTPQVD LAHLLAARDQ ELRTVSAEMN QIQSELSLAR SLIAERDSEI QQVRTTNNQY
301: IEENERLRAI LGEWSNRAAK LERALEVERM SNLELQKKIT TLRNQQNLSG EPS

Best Arabidopsis Sequence Match ( AT2G06005.1 )
(BLAST)

001: MSTERRASSN PMTNEENAMF LDILHEAPLF GHRKSRSLVG SYLYMLLLAG YAILAAGAPW MFHRVQQLTP SLLCCCDVAL LVVTGVFQQY FVYQVQKIRL
101: QGYYSFSQKL KHVVRLPFAI AAYGTAAMLL VIVWRPQIHI LSISSLQRII MLVEAVGAGF FMGLYIGYVH QYNSVNSRPD VLKSLYSPLQ PSSSMEGLRY
201: YEGRLSDQQT ALLQYQRENL HFLSEEILCL QEKLSKYEQS DDGSTPQVDL AHLLAARDQE LRTLSAEMNQ LQSELRLARS LIAERDAEVQ RVNSTNNQYI
301: EENERLRAIL SEWSMRAANL ERALEVERMS NSELQKEVAS TRRKQMLETT TSEQP

Arabidopsis Description

FIP1Protein FIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8K9]
SUBAcon: [endoplasmic reticulum,plasma membrane,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.