Factsheet for VIT_19s0014g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0204g00020.t01
VIT_11s0016g01110.t01
VIT_19s0014g00030.t01
VIT_19s0014g00060.t01
VIT_19s0090g01700.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G00650.1	VIT_11s0016g01110.t01	AT2G06005.1	19429606
AT4G00650.1	VIT_19s0014g00030.t01	AT4G00650.1	17138694
AT4G00650.1	VIT_19s0014g00060.t01	AT4G00650.1	17138694
AT4G00650.1	VIT_19s0014g00030.t01	AT4G00650.1	19429606
AT4G00650.1	VIT_19s0014g00060.t01	AT4G00650.1	19429606
AT4G00650.1	VIT_00s0204g00020.t01	AT4G17060.1	19429606
AT4G00650.1	VIT_19s0090g01700.t01	AT5G16320.1	19429606

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117920.1.1	Tomato	nucleus	31.23	27.73
KRH63904	Soybean	nucleus	39.75	20.97
KRH54046	Soybean	nucleus	37.85	20.27
PGSC0003DMT400037427	Potato	nucleus, plastid	25.87	14.83
Solyc12g042440.1.1	Tomato	nucleus, plastid	25.55	14.81
Solyc06g074450.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	25.55	14.16
PGSC0003DMT400080001	Potato	nucleus	29.97	13.27
CDY32645	Canola	nucleus	24.29	13.21
CDX71688	Canola	nucleus	24.29	13.16
Solyc03g117930.2.1	Tomato	nucleus	23.66	12.76
Bra029192.1-P	Field mustard	nucleus, plastid	23.03	12.44
CDY38847	Canola	nucleus, plastid	23.34	12.42
Solyc04g072200.1.1	Tomato	cytosol	27.76	12.24
PGSC0003DMT400094724	Potato	nucleus	27.13	11.03
VIT_14s0030g00690.t01	Wine grape	extracellular, golgi	14.51	10.53
PGSC0003DMT400080000	Potato	nucleus	23.97	10.09
VIT_19s0090g01700.t01	Wine grape	cytosol	11.36	9.35
VIT_05s0020g03470.t01	Wine grape	nucleus	14.83	9.0
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	13.56	7.64
VIT_11s0016g04070.t01	Wine grape	nucleus	11.36	6.75
VIT_07s0129g00610.t01	Wine grape	cytosol	11.99	6.59
EER93089	Sorghum	plastid	8.52	5.84
CDY05835	Canola	cytosol, nucleus, plastid	5.99	5.29
Bra035723.1-P	Field mustard	plastid	5.99	5.19
Os03t0851400-01	Rice	extracellular	6.94	5.02
HORVU5Hr1G122680.1	Barley	mitochondrion, peroxisome, plastid	7.26	4.32
TraesCS4A01G329000.1	Wheat	plastid	6.62	4.24
TraesCS5B01G543400.1	Wheat	plastid	6.94	4.22
TraesCS5D01G544800.1	Wheat	mitochondrion	6.94	3.92
PGSC0003DMT400084922	Potato	cytosol	4.42	3.54
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	2.21	2.35
Solyc03g117910.2.1	Tomato	plastid	1.58	1.45
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	0.63	0.69
VIT_19s0090g01710.t01	Wine grape	cytosol	0.32	0.37
AT4G00650.1	Thale cress	plastid	0.0	0.0

Protein Annotations

EntrezGene:100258973	wikigene:100258973	MapMan:35.1	EMBL:AM440078	ProteinID:CAN80567	ProteinID:CAN80567.1
ProteinID:CBI20084	ProteinID:CBI20084.3	UniProt:E0CRY5	EMBL:FN595229	InterPro:Frigida	GO:GO:0000003
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016787	GO:GO:0030154	GO:GO:0090305	EntrezGene:LOC100258973
wikigene:LOC100258973	PFAM:PF07899	PANTHER:PTHR31791	PANTHER:PTHR31791:SF3	UniParc:UPI0001BE19EE	ArrayExpress:VIT_19s0014g00060
EnsemblPlantsGene:VIT_19s0014g00060	EnsemblPlants:VIT_19s0014g00060.t01	RefSeq:XP_002283789	RefSeq:XP_002283789.1	SEG:seg	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:E0CRY5]

Coordinates

chr19:+:44372..45554

Molecular Weight (calculated)

34485.0 Da

IEP (calculated)

7.035

GRAVY (calculated)

-0.455

Length

317 amino acids

Sequence
(BLAST)

001: MNVEAVDFAY TFGLEEKFPI WKILTSFLRE HKEEWKRTRE EDSPIRLKKA NENYLSAMKS VTRCLEDHRV DPSKLLSGWH IDEKIIQLEK EMADLDKKME
101: GKVMLKRKAD EIDSLKKMKT REIKHSPIAA PSSVIGLQEQ RVADNMASRS FYDSTMPINF LDSGFPGHIS TYPAASAMLH GSGGGSLPEN ITGTMSGSGS
201: GTRVHGTGTG PGMAGTGGVP SMASFSGAHG EMLFDRTGQM MKNNGPPYAG RRDMGFNDRV IGQSFIAHPA SMGVDSIFGP STSMESFPGM PNAPSINAAN
301: GSSASDLYQF ADAVFGR

Best Arabidopsis Sequence Match ( AT5G48385.1 )
(BLAST)

001: MEDTRSVASL MDSTSSKIQQ LQKAFAELES QRAVTLNLKW KELEEHFHGL ERSLKRRFHE LEDQEKEYET KTRKAQELLE KKKAAVEAKE KAALERLQKK
101: RDAAMFTINS ALDKYNNAPV SKPSVGERWP QNAVEDSSNV FAADSITDDN PDGIVQDVQI SPVMGNYEVK AYPQLLKLCG DMDSTGLHKF VSDNRKNLAS
201: LKEEIPMAFR AAANPASLVL DSLEGFYPME APTADGKKDA NLLGMRRTCI MLMECLSILL SGLDRNCLAV VLSQNVKHRA KTIAEGWNPL LESLDMDACN
301: GNSLEAHAFL QLLATFAIVA DFKEDELLKL IPMVSRRRQA AELCRSLGLA EKMPGVIEVL VNSGKQIDAV NLAFAFELTE QFSPVSLLKS YLIEARRSSP
401: QGRPGNASPA VQDEFNEREL IGLKTVIKCI EEHSLEEQYP VEPLHKRILQ LEKAKADKKR ATEPMKPQPK RPRGAQPRVT DNNNNINNNK TGYGRVIPER
501: YPQYVYDNRP FLSGPIMAAQ PPPPPPPQTY TFNPAPAHGN FYANCYQYQA PPPPPYFH

Arabidopsis Description

FRL3FRIGIDA-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZB3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.