Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g00850.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 31.73 | 28.86 |
| VIT_19s0090g01700.t01 | Wine grape | cytosol | 32.47 | 22.86 |
| VIT_19s0014g00030.t01 | Wine grape | cytosol, golgi, nucleus | 21.03 | 19.59 |
| VIT_07s0151g00650.t01 | Wine grape | endoplasmic reticulum, extracellular | 33.21 | 15.99 |
| VIT_07s0129g00610.t01 | Wine grape | cytosol | 29.15 | 13.69 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 23.62 | 12.26 |
| VIT_11s0016g04070.t01 | Wine grape | nucleus | 22.14 | 11.26 |
| VIT_14s0030g00690.t01 | Wine grape | extracellular, golgi | 10.7 | 6.64 |
| PGSC0003DMT400036725 | Potato | nucleus | 0.74 | 0.74 |
| VIT_19s0014g00060.t01 | Wine grape | nucleus | 0.37 | 0.32 |
Protein Annotations
| MapMan:35.1 | ProteinID:CCB50725 | ProteinID:CCB50725.1 | UniProt:F6HER3 | EMBL:FN595751 | InterPro:Frigida |
| GO:GO:0000003 | GO:GO:0005575 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0030154 | PFAM:PF07899 | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF13 | UniParc:UPI000210A415 | ArrayExpress:VIT_19s0090g01710 | EnsemblPlantsGene:VIT_19s0090g01710 | EnsemblPlants:VIT_19s0090g01710.t01 | unigene:Vvi.25228 |
| SEG:seg | : | : | : | : | : |
Description
FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:F6HER3]
Coordinates
chr19:+:7752281..7754323
Molecular Weight (calculated)
30296.5 Da
IEP (calculated)
6.356
GRAVY (calculated)
-0.086
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVKTIALG LTLIDEKKEE LRIAFEDLQA HSSSPSSFTL TWSDIDSHFS SIQSSLTRQF DLIQCQNDVV PEILQKYVPP SHPRLKLLCS NMDANGLTRY
101: IIDHSKDRQE IASELPDAFR VAPVPAKLVL DALQEFFPPN EVDNEGNKLG SLMQTRLLLL EQLTAVLPEI KADVMQRAKY LAQEWKGKIN RGAVTSNGFL
201: GFLYLLAAYG MGSDFDSSEY VEFLANVVVQ NRQQGFTLCC RLNCVDKVPG FVVSLVRCGH VLQRRLSTSA K
101: IIDHSKDRQE IASELPDAFR VAPVPAKLVL DALQEFFPPN EVDNEGNKLG SLMQTRLLLL EQLTAVLPEI KADVMQRAKY LAQEWKGKIN RGAVTSNGFL
201: GFLYLLAAYG MGSDFDSSEY VEFLANVVVQ NRQQGFTLCC RLNCVDKVPG FVVSLVRCGH VLQRRLSTSA K
001: MTAAESIAAS INQIDEKKQK LKKAFDDLQA HRSLLSPSFN LSWSEIDSHF SSLQSSLFNR LQSAVTSSNS GNIETPTAVT TETPVLWPEL RKFCEKNDGK
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ
101: GLGNYMIENS RKRLSINEEL PNAIRCSENP APLVLDAIEG SYHCSSPSSS SSARAIDVKR IFVLLLEALI EINANLTNDL RERARTIAYD WKPNIGNKPS
201: EALGFLHLVA AFELGSLFST EEICDYIFLI SKYKQATTIC KKIGLDRNRI GVLVQKFLDT GRLLVAIRFI YENEMVGEFE PVSILKTSLK NSREAAKRVC
301: AEGNYSLKVQ NEATDKELSA LRAVIKVVKE KNIESEFMEE KLEECVKELE DQKAQRKRAT KFNSPANPQQ PQEQKVDNKR PRVANGSSME YNLTIPPLRP
401: QQQPPLLPTP SQILQVNPYG LLSSILPGVA VPYGNPRALF GSVPAPASRP VFYVQQTGYG MPPPQYRPPY YPQ
Arabidopsis Description
FRL2Inactive FRIGIDA-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6S2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.