Factsheet for VIT_14s0030g00690.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19713	Canola	cytosol	16.7	24.01
CDX99994	Canola	peroxisome	17.85	23.35
VIT_19s0090g01700.t01	Wine grape	cytosol	20.37	23.12
GSMUA_Achr9P09220_001	Banana	nucleus	20.59	22.73
VIT_05s0020g03470.t01	Wine grape	nucleus	21.28	17.82
CDX99996	Canola	extracellular	6.18	16.77
GSMUA_Achr6P24860_001	Banana	nucleus	18.54	16.7
TraesCS4B01G266000.1	Wheat	cytosol, nucleus, plasma membrane	17.62	15.46
VIT_07s0151g00650.t01	Wine grape	endoplasmic reticulum, extracellular	19.91	15.45
TraesCS4D01G265900.1	Wheat	nucleus	17.39	15.26
HORVU4Hr1G071420.1	Barley	cytosol, plastid	17.16	15.09
EER92706	Sorghum	plastid	17.16	14.62
VIT_19s0014g00060.t01	Wine grape	nucleus	10.53	14.51
VIT_11s0016g04070.t01	Wine grape	nucleus	17.39	14.26
TraesCS4A01G039500.1	Wheat	cytosol, nucleus, plasma membrane, plastid	16.48	14.06
Zm00001d028173_P002	Maize	plastid	16.25	13.87
VIT_07s0129g00610.t01	Wine grape	cytosol	18.31	13.86
Os03t0193225-01	Rice	plasma membrane	15.56	13.23
VIT_19s0090g01710.t01	Wine grape	cytosol	6.64	10.7
VIT_17s0000g00850.t01	Wine grape	cytosol, peroxisome, plasma membrane	6.86	10.07
AT5G27230.1	Thale cress	nucleus	20.59	9.49
Bra036105.1-P	Field mustard	nucleus	17.39	9.11
CDX86173	Canola	cytosol	15.79	7.99
CDX80668	Canola	cytosol, mitochondrion, plasma membrane	16.25	7.96
Bra009973.1-P	Field mustard	cytosol	15.79	7.94
VIT_19s0014g00030.t01	Wine grape	cytosol, golgi, nucleus	3.89	5.84
CDY19712	Canola	cytosol, nucleus, peroxisome	0.23	0.21
CDX99995	Canola	cytosol, nucleus, peroxisome	0.23	0.21

Protein Annotations

MapMan:35.1	ProteinID:CBI34294	ProteinID:CBI34294.3	ncoils:Coil	UniProt:D7TUW9	EMBL:FN596249
InterPro:Frigida	GO:GO:0000003	GO:GO:0005575	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0030154	PFAM:PF07899
PANTHER:PTHR31791	PANTHER:PTHR31791:SF16	TMHMM:TMhelix	UniParc:UPI0001BE4335	ArrayExpress:VIT_14s0030g00690	EnsemblPlantsGene:VIT_14s0030g00690
EnsemblPlants:VIT_14s0030g00690.t01	SEG:seg	:	:	:	:

Description

FRIGIDA-like protein [Source:UniProtKB/TrEMBL;Acc:D7TUW9]

Coordinates

chr14:-:4829884..4833159

Molecular Weight (calculated)

49052.0 Da

IEP (calculated)

9.799

GRAVY (calculated)

-0.683

Length

437 amino acids

Sequence
(BLAST)

001: MKLAVDWKEK FVKKYEVPQK FLGFYLLLAI YGLASSFDPD ELLGLLMNMD HSKKLRVTPD LCLALGLADK IPNYIQDLIE RNLLSDAIQY IHVFELVDKF
101: PPVSILKSYL NDSKWRVFKK EKNPHLREDD VMNKELTALR DVISCITEHH LESEYPPEDL EKRIEQLKKK ADKKKFLEQQ TKKKADKKCR RAVVPKPQPP
201: QQSIPPQLPK QSAPEPQPPQ HSAPEPQPSQ QNAPESQLPQ QSVPEPQLPN QNVLTPQRSQ EIALTPQLPG ESGPKSQPPQ QSIFKPQPQP HSQPSQLIAL
301: KPQLSQITVI PQRPQQSIPK PQPPQQSGNK RPWTAMSAEA APPTYFVASP TAHSIQPPLQ RPVGYFINQA APYLSMSAGH YRTPDRPYGL SGLPLGSPHS
401: VAVNGLSRPY GPVGNLPGMG VANPNGFVHY YPRDALR

Best Arabidopsis Sequence Match ( AT5G27230.1 )
(BLAST)

001: MEKVTSGLEL VDISKRNFRK TLESLQEGAH SLLLLTIQWK EIESYFDSTR SVLEERAKEL EALEESIKVK ALELEKKEKE LCLIDESMKA KQSEFEKKEK
101: DFDLEQKAEV EKRKREVEQL EKFTTRMESV ERVSDEKLME LGLRATELEL KMEEVEKHRE RIVAGDKLRG EFEPLVSLLA KNMGLSVTMP VKCSTLYLNE
201: NADEMVKKNT ALARMVPYLD PAKVVLDAIE GSFKEYWKKD LGEADDRVVN SWIVLLENLI KMNLKITPQV KQEATPLGIA WLGKAKANMK NDPPQVFGCA
301: LFLAAYGLGS LTTHGVLLTL VERFLLYDHA PKLFRLLGLE EKVSGAVETL KKKEEYLATL KFICEFRLYK LCPGGRPGEL LIEFFDSSDK AARVIAGTGT
401: SMEAQKARRE KKKADAAMAI KYIKEAKAET MFPAKILKRL AVVKNDESAQ RAMEPVQKSY EKRQSTTKGV EKSEAKSSIP YEQKHVIKRP RLTEPTAPSQ
501: NLTVKQPEVV CVPTGKQVKE SGADHQPDTI ATHPSGTETK LNILSGSIKA DMLRELVEKQ PLKESEDLSN ALKCTPDPAK LFLDTSMALC PTNTEGGYEF
601: KMLITSASCS LLLNQLKKLL PKIGHPVKGD AKKLAVYWKD KIAKSKRDQL EVICFLQFLG IFGIVSEFKA DDLLGLLDNS YWQTVSPDLC QFLGLDDAIP
701: GFIQNLIKTG HRIKAIDYIY SFGMVHRFQP VSAIINDSLR ITKESAEKSY REAKNESTTQ VAAIDRQVRA LRAAIKCISC HKLESEFQLG DLEEQIKSLL
801: KLRRNTSNGS GSGSASSKPD STIKQSQTAK PPTVAEVAPV TSNIPLEPST EAASSSASKP FSKKNKRGKK RSMSGNNQSS GHIASHTSNH YPSHDYSLNQ
901: RLTWPVDNYD RGFTGFPNPD YNNNQWGQPE GPQFYHLYQP LDPRYRNY

Arabidopsis Description

FRL5FRIGIDA-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q5XV31]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.